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Recent advances in high-throughput sequencing technologies have enabled the extraction of multiple features that depict patient samples at diverse and complementary molecular levels. The generation of such data has led to new challenges in…

Genomics · Quantitative Biology 2022-09-14 Hakim Benkirane , Yoann Pradat , Stefan Michiels , Paul-Henry Cournède

In this work, we bridge standard adaptive mesh refinement and coarsening on scalable octree background meshes and robust unfitted finite element formulations for the automatic and efficient solution of large-scale nonlinear solid mechanics…

Numerical Analysis · Mathematics 2021-09-01 Santiago Badia , Manuel Caicedo , Alberto F. Martín , Javier Principe

Data modeling and reduction for in situ is important. Feature-driven methods for in situ data analysis and reduction are a priority for future exascale machines as there are currently very few such methods. We investigate a deep-learning…

Machine Learning · Computer Science 2019-12-10 Qun Liu , Subhashis Hazarika , John M. Patchett , James Paul Ahrens , Ayan Biswas

In this paper, we develop a nonlinear reduction framework based on our recently introduced extended group finite element method. By interpolating nonlinearities onto approximation spaces defined with the help of finite elements, the…

Numerical Analysis · Mathematics 2021-06-07 Kevin Tolle , Nicole Marheineke

Modern computational methods, involving highly sophisticated mathematical formulations, enable several tasks like modeling complex physical phenomenon, predicting key properties and design optimization. The higher fidelity in these computer…

Computational Engineering, Finance, and Science · Computer Science 2023-04-13 Lele Luan , Nesar Ramachandra , Sandipp Krishnan Ravi , Anindya Bhaduri , Piyush Pandita , Prasanna Balaprakash , Mihai Anitescu , Changjie Sun , Liping Wang

We present a systematic investigation of convolutional autoencoders for the reduced-order representation of three-dimensional interfacial multiphase flows. Focusing on the reconstruction of phase indicators, we examine how the choice of…

Computational Engineering, Finance, and Science · Computer Science 2025-12-29 Murray Cutforth , Shahab Mirjalili

Learning latent representations of registered meshes is useful for many 3D tasks. Techniques have recently shifted to neural mesh autoencoders. Although they demonstrate higher precision than traditional methods, they remain unable to…

Computer Vision and Pattern Recognition · Computer Science 2020-10-22 Yi Zhou , Chenglei Wu , Zimo Li , Chen Cao , Yuting Ye , Jason Saragih , Hao Li , Yaser Sheikh

We extend the framework of variational autoencoders to represent transformations explicitly in the latent space. In the family of hierarchical graphical models that emerges, the latent space is populated by higher order objects that are…

Machine Learning · Computer Science 2020-04-24 Giorgio Giannone , Saeed Saremi , Jonathan Masci , Christian Osendorfer

Reduced-order models, also known as proxy model or surrogate model, are approximate models that are less computational expensive as opposed to fully descriptive models. With the integration of machine learning, these models have garnered…

Machine Learning · Computer Science 2024-10-15 Jungang Chen , Eduardo Gildin , John Killough

We present a new data-driven reduced-order modeling approach to efficiently solve parametrized partial differential equations (PDEs) for many-query problems. This work is inspired by the concept of implicit neural representation (INR),…

Numerical Analysis · Mathematics 2023-11-30 Tianshu Wen , Kookjin Lee , Youngsoo Choi

In this paper, we present a multi-dimensional, arbitrary-order hybrid reconstruction framework for compressible flows on unstructured meshes. The method combines the efficiency of linear reconstruction with the robustness of high-order…

Numerical Analysis · Mathematics 2026-01-22 Yiren Tong , Panagiotis Tsoutsanis

We present an efficient data-driven regression approach for constructing reduced-order models (ROMs) of reaction-diffusion systems exhibiting pattern formation. The ROMs are learned non-intrusively from available training data of physically…

Pattern Formation and Solitons · Physics 2025-08-12 Alessandro Alla , Rudy Geelen , Hannah Lu

We propose a principled method for autoencoding with random forests. Our strategy builds on foundational results from nonparametric statistics and spectral graph theory to learn a low-dimensional embedding of the model that optimally…

Machine Learning · Statistics 2026-01-16 Binh Duc Vu , Jan Kapar , Marvin Wright , David S. Watson

The magnetohydrodynamics (MHD) equations are continuum models used in the study of a wide range of plasma physics systems, including the evolution of complex plasma dynamics in tokamak disruptions. However, efficient numerical solution…

Computational Physics · Physics 2022-02-09 Qi Tang , Luis Chacon , Tzanio V. Kolev , John N. Shadid , Xian-Zhu Tang

This paper introduces an algorithm for the detection of change-points and the identification of the corresponding subsequences in transient multivariate time-series data (MTSD). The analysis of such data has become more and more important…

Signal Processing · Electrical Eng. & Systems 2023-04-05 Jonas Köhne , Lars Henning , Clemens Gühmann

We show how spectral submanifold theory can be used to construct reduced-order models for harmonically excited mechanical systems with internal resonances. Efficient calculations of periodic and quasi-periodic responses with the…

Dynamical Systems · Mathematics 2022-08-09 Mingwu Li , Shobhit Jain , George Haller

The modelling of multiphase flow in a pipe presents a significant challenge for high-resolution computational fluid dynamics (CFD) models due to the high aspect ratio (length over diameter) of the domain. In subsea applications, the pipe…

Autoencoders are certainly among the most studied and used Deep Learning models: the idea behind them is to train a model in order to reconstruct the same input data. The peculiarity of these models is to compress the information through a…

Machine Learning · Computer Science 2023-09-06 Gabriele Martino , Davide Moroni , Massimo Martinelli

A common pipeline in functional data analysis is to first convert the discretely observed data to smooth functions, and then represent the functions by a finite-dimensional vector of coefficients summarizing the information. Existing…

Machine Learning · Computer Science 2024-01-19 Sidi Wu , Cédric Beaulac , Jiguo Cao

We propose a general strategy for reduced order modeling of systems that display highly nonlinear oscillations. By considering a continuous family of forced periodic orbits defined in relation to a stable fixed point and subsequently…

Dynamical Systems · Mathematics 2023-02-07 Dan Wilson , Kai Sun