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Simulating the long-timescale dynamics of biomolecules is a central challenge in computational science. While enhanced sampling methods can accelerate these simulations, they rely on pre-defined collective variables that are often difficult…

Biomolecules · Quantitative Biology 2025-12-01 Aditya Sengar , Jiying Zhang , Pierre Vandergheynst , Patrick Barth

Molecular Dynamics (MD) simulation is a powerful tool for understanding the dynamics and structure of matter. Since the resolution of MD is atomic-scale, achieving long time-scale simulations with femtosecond integration is very expensive.…

Machine Learning · Computer Science 2022-04-27 Zijie Li , Kazem Meidani , Prakarsh Yadav , Amir Barati Farimani

Recent studies have introduced a new class of generative models for synthesizing implicit neural representations (INRs) that capture arbitrary continuous signals in various domains. These models opened the door for domain-agnostic…

Machine Learning · Computer Science 2024-03-21 Dogyun Park , Sihyeon Kim , Sojin Lee , Hyunwoo J. Kim

This paper studies the dynamic generator model for spatial-temporal processes such as dynamic textures and action sequences in video data. In this model, each time frame of the video sequence is generated by a generator model, which is a…

Machine Learning · Statistics 2018-12-31 Jianwen Xie , Ruiqi Gao , Zilong Zheng , Song-Chun Zhu , Ying Nian Wu

Downscaling techniques are one of the most prominent applications of Deep Learning (DL) in Earth System Modeling. A robust DL downscaling model can generate high-resolution fields from coarse-scale numerical model simulations, saving the…

Machine Learning · Computer Science 2025-08-28 Elena Tomasi , Gabriele Franch , Marco Cristoforetti

Latent dynamical models are commonly used to learn the distribution of a latent dynamical process that represents a sequence of noisy data samples. However, producing samples from such models with high fidelity is challenging due to the…

Machine Learning · Computer Science 2023-08-17 Mohammad R. Rezaei

Accurate emulation of multi-scale physical systems governed by PDEs demands models that remain stable over long autoregressive rollouts while preserving fine-scale structures. Deterministic emulators produce overly-smoothed predictions,…

Recent advances in artificial intelligence have propelled the development of innovative computational materials modeling and design techniques. Generative deep learning models have been used for molecular representation, discovery, and…

Chemical Physics · Physics 2021-02-12 Navid Shervani-Tabar , Nicholas Zabaras

Diffusion models are the standard toolkit for generative modelling of 3D atomic systems. However, for different types of atomic systems -- such as molecules and materials -- the generative processes are usually highly specific to the target…

Deep generative models like variational autoencoders approximate the intrinsic geometry of high dimensional data manifolds by learning low-dimensional latent-space variables and an embedding function. The geometric properties of these…

Computer Vision and Pattern Recognition · Computer Science 2019-02-20 Ankita Shukla , Shagun Uppal , Sarthak Bhagat , Saket Anand , Pavan Turaga

Although deep learning has achieved appealing results on several machine learning tasks, most of the models are deterministic at inference, limiting their application to single-modal settings. We propose a novel general-purpose framework…

Machine Learning · Computer Science 2020-10-12 Sameera Ramasinghe , Kanchana Ranasinghe , Salman Khan , Nick Barnes , Stephen Gould

Virtual beam diagnostics relies on computationally intensive beam dynamics simulations where high-dimensional charged particle beams evolve through the accelerator. We propose Latent Evolution Model (LEM), a hybrid machine learning…

Accelerator Physics · Physics 2026-02-27 Mahindra Rautela , Alexander Scheinker

In many real-world settings, image observations of freely rotating 3D rigid bodies may be available when low-dimensional measurements are not. However, the high-dimensionality of image data precludes the use of classical estimation…

Computer Vision and Pattern Recognition · Computer Science 2024-04-12 Justice Mason , Christine Allen-Blanchette , Nicholas Zolman , Elizabeth Davison , Naomi Ehrich Leonard

Seismic acoustic impedance plays a crucial role in lithological identification and subsurface structure interpretation. However, due to the inherently ill-posed nature of the inversion problem, directly estimating impedance from post-stack…

Machine Learning · Computer Science 2025-06-17 Jie Chen , Hongling Chen , Jinghuai Gao , Chuangji Meng , Tao Yang , XinXin Liang

Machine learning has emerged recently as a powerful tool for predicting properties of quantum many-body systems. For many ground states of gapped Hamiltonians, generative models can learn from measurements of a single quantum state to…

Quantum Physics · Physics 2024-03-05 Haoxiang Wang , Maurice Weber , Josh Izaac , Cedric Yen-Yu Lin

We propose machine learning (ML) models to predict the electron density -- the fundamental unknown of a material's ground state -- across the composition space of concentrated alloys. From this, other physical properties can be inferred,…

In this study, we focus on sampling from the latent space of generative models built upon autoencoders so as the reconstructed samples are lifelike images. To do to, we introduce a novel post-training sampling algorithm rooted in the…

Machine Learning · Computer Science 2023-08-22 Aymene Mohammed Bouayed , Adrian Iaccovelli , David Naccache

The present work proposes an inflow turbulence generation strategy using deep learning methods. This is achieved with the help of an autoencoder architecture with two different types of operational layers in the latent-space: a fully…

Fluid Dynamics · Physics 2019-10-16 Aakash Vijay Patil

A parametric adaptive greedy Latent Space Dynamics Identification (gLaSDI) framework is developed for accurate, efficient, and certified data-driven physics-informed greedy auto-encoder simulators of high-dimensional nonlinear dynamical…

Machine Learning · Computer Science 2022-11-28 Xiaolong He , Youngsoo Choi , William D. Fries , Jonathan L. Belof , Jiun-Shyan Chen

Latent diffusion models offer an attractive alternative to discrete diffusion for non-autoregressive text generation by operating on continuous text representations and denoising entire sequences in parallel. The major challenge in latent…

Computation and Language · Computer Science 2026-05-11 Viacheslav Meshchaninov , Alexander Shabalin , Egor Chimbulatov , Nikita Gushchin , Ilya Koziev , Alexander Korotin , Dmitry Vetrov
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