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Large language models (LLMs) have demonstrated transformative potential in scientific research, yet their deployment in high-stakes contexts raises significant trustworthiness concerns. Here, we introduce SciTrust 2.0, a comprehensive…

Artificial Intelligence · Computer Science 2025-10-31 Emily Herron , Junqi Yin , Feiyi Wang

Molecular Relational Learning (MRL) aims to understand interactions between molecular pairs, playing a critical role in advancing biochemical research. With the recent development of large language models (LLMs), a growing number of studies…

Machine Learning · Computer Science 2025-06-03 Zhuo Chen , Yizhen Zheng , Huan Yee Koh , Hongxin Xiang , Linjiang Chen , Wenjie Du , Yang Wang

Large Language Models (LLMs) offer new potential for automating documentation-to-code traceability, yet their capabilities remain underexplored. We present a comprehensive evaluation of LLMs (Claude 3.5 Sonnet, GPT-4o, and o3-mini) in…

Software Engineering · Computer Science 2025-08-08 Ebube Alor , SayedHassan Khatoonabadi , Emad Shihab

Large language models (LLMs) have recently achieved significant success across various application domains, garnering substantial attention from different communities. Unfortunately, even for the best LLM, many \textit{faults} still exist…

Software Engineering · Computer Science 2024-11-06 Qiang Hu , Jin Wen , Maxime Cordy , Yuheng Huang , Wei Ma , Xiaofei Xie , Lei Ma

Code analysis is fundamental in Software Engineering, supporting debugging, optimization, and security assessment. Human developers approach it through syntax parsing, static semantics inference, and dynamic reasoning. Traditional tools are…

Software Engineering · Computer Science 2026-05-22 Wei Ma , Zhihao Lin , Shangqing Liu , Qiang Hu , Ye Liu , Wenhan Wang , Cen Zhang , Liming Nie , Li Li , Yang Liu , Lingxiao Jiang

Large Language Models (LLMs) are increasingly applied to real-world code generation, where functional correctness alone is insufficient for reliable deployment, developers also expect adherence to explicit requirements for robustness,…

Software Engineering · Computer Science 2025-12-22 Sravani Gunnu , Shanmukha Guttula , Hima Patel

A molecule's properties are fundamentally determined by its composition and structure encoded in its molecular graph. Thus, reasoning about molecular properties requires the ability to parse and understand the molecular graph. Large…

Machine Learning · Computer Science 2026-01-22 Christoph Bartmann , Johannes Schimunek , Mykyta Ielanskyi , Philipp Seidl , Günter Klambauer , Sohvi Luukkonen

Recent claims of strong performance by Large Language Models (LLMs) on causal discovery are undermined by a key flaw: many evaluations rely on benchmarks likely included in pretraining corpora. Thus, apparent success suggests that LLM-only…

Large Language Model (LLM)-based systems present new opportunities for autonomous health monitoring in sensor-rich industrial environments. This study explores the potential of LLMs to detect and classify faults directly from sensor data,…

Artificial Intelligence · Computer Science 2025-09-30 Xian Yeow Lee , Lasitha Vidyaratne , Ahmed Farahat , Chetan Gupta

Despite various approaches being employed to detect vulnerabilities, the number of reported vulnerabilities shows an upward trend over the years. This suggests the problems are not caught before the code is released, which could be caused…

Cryptography and Security · Computer Science 2025-02-14 Karl Tamberg , Hayretdin Bahsi

Large Language Models (LLMs) have transformed artificial intelligence, offering profound opportunities for educational applications. However, their ability to provide fine-grained educational feedback for K-12 English writing remains…

Computation and Language · Computer Science 2025-12-01 Jingheng Ye , Shen Wang , Jiaqi Chen , Hebin Wang , Deqing Zou , Yanyu Zhu , Jiwei Tang , Hai-Tao Zheng , Ruitong Liu , Haoyang Li , Yanfeng Wang , Qingsong Wen

Large Language Models (LLMs) are extensively used today across various sectors, including academia, research, business, and finance, for tasks such as text generation, summarization, and translation. Despite their widespread adoption, these…

Computation and Language · Computer Science 2024-04-26 Yash Saxena , Sarthak Chopra , Arunendra Mani Tripathi

Identifying the point of error is imperative in software debugging. Traditional fault localization (FL) techniques rely on executing the program and using the code coverage matrix in tandem with test case results to calculate a…

Software Engineering · Computer Science 2024-08-20 Suhwan Ji , Sanghwa Lee , Changsup Lee , Hyeonseung Im , Yo-Sub Han

In this paper we present the first investigation into the effectiveness of Large Language Models (LLMs) for Failure Mode Classification (FMC). FMC, the task of automatically labelling an observation with a corresponding failure mode code,…

Computation and Language · Computer Science 2023-09-18 Michael Stewart , Melinda Hodkiewicz , Sirui Li

Recently, large language models (LLMs) have shown significant progress, approaching human perception levels. In this work, we demonstrate that despite these advances, LLMs still struggle to reason using molecular structural information.…

Machine Learning · Computer Science 2025-05-26 Yunhui Jang , Jaehyung Kim , Sungsoo Ahn

Large language models (LLMs) could be valuable personal AI agents across various domains, provided they can precisely follow user instructions. However, recent studies have shown significant limitations in LLMs' instruction-following…

Artificial Intelligence · Computer Science 2025-03-31 Juyeon Heo , Miao Xiong , Christina Heinze-Deml , Jaya Narain

Large language models (LLMs) often produce unsupported or unverifiable content, known as "hallucinations." To mitigate this, retrieval-augmented LLMs incorporate citations, grounding the content in verifiable sources. Despite such…

Information Retrieval · Computer Science 2024-08-26 Weijia Zhang , Mohammad Aliannejadi , Yifei Yuan , Jiahuan Pei , Jia-Hong Huang , Evangelos Kanoulas

Large language models (LLMs) encode a vast amount of semantic knowledge and possess remarkable understanding and reasoning capabilities. Previous work has explored how to ground LLMs in robotic tasks to generate feasible and executable…

Robotics · Computer Science 2024-09-17 Yanjiang Guo , Yen-Jen Wang , Lihan Zha , Jianyu Chen

The proliferation of open-source Large Language Models (LLMs) from various institutions has highlighted the urgent need for comprehensive evaluation methods. However, current evaluation platforms, such as the widely recognized HuggingFace…

Computation and Language · Computer Science 2024-11-01 Fanghua Ye , Mingming Yang , Jianhui Pang , Longyue Wang , Derek F. Wong , Emine Yilmaz , Shuming Shi , Zhaopeng Tu