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We propose a new compression scheme for genomic data given as sequence fragments called reads. The scheme uses a reference genome at the decoder side only, freeing the encoder from the burdens of storing references and performing…

Information Theory · Computer Science 2023-02-10 Yotam Gershon , Yuval Cassuto

Environmental effects on the transmission of a state result, in general, in a change in the information carried by it. To mitigate this, many techniques such as quantum error--correcting codes, decoherence--free--subspaces [Rev Mod Phys,…

Quantum Physics · Physics 2021-11-29 Rajni Bala , V. Ravishankar

We consider experimentally feasible chains of trapped ions with pseudo-spin 1/2, and find models that can potentially be used to implement error-resistant quantum computation. Similar in spirit to classical neural networks, the…

Quantum Physics · Physics 2009-10-20 Sibylle Braungardt , Aditi Sen De , Ujjwal Sen , Maciej Lewenstein

We study coordination under restricted information, where classical local models fail to implement certain correlated distributions because agents cannot condition on past history. We show that quantum systems overcome this limitation even…

Quantum Physics · Physics 2026-05-08 Faisal Shah Khan

In order to survive, reproduce and (in multicellular organisms) differentiate, cells must control the concentrations of the myriad different proteins that are encoded in the genome. The precision of this control is limited by the inevitable…

Molecular Networks · Quantitative Biology 2013-08-01 Gasper Tkacik , Aleksandra M. Walczak , William Bialek

Control over spin dynamics has been obtained in NMR via coherent averaging, which is implemented through a sequence of RF pulses, and via quantum codes which can protect against incoherent evolution. Here, we discuss the design and…

Quantum Physics · Physics 2009-11-06 Yehuda Sharf , Timothy F. Havel , David G. Cory

The fidelity of quantum cloning is very often limited by the accompanying unwanted transitions. We show how the fidelity can be improved by using a coherent field to cycle away the unwanted transitions. We demonstrate this explicitly in the…

Quantum Physics · Physics 2009-11-06 Shubhrangshu Dasgupta , G. S. Agarwal

Composite DNA is a recent novel method to increase the information capacity of DNA-based data storage above the theoretical limit of 2 bits/symbol. In this method, every composite symbol does not store a single DNA nucleotide but a mixture…

Information Theory · Computer Science 2025-01-22 Tuan Thanh Nguyen , Chen Wang , Kui Cai , Yiwei Zhang , Zohar Yakhini

We propose genetic algorithms, which are robust optimization techniques inspired by natural selection, to enhance the versatility of digital quantum simulations. In this sense, we show that genetic algorithms can be employed to increase the…

Quantum Physics · Physics 2016-06-22 U. Las Heras , U. Alvarez-Rodriguez , E. Solano , M. Sanz

Optical telecommunication is at the heart of today's internet and is currently enabled by the transmission of intense optical signals between remote locations. As we look to the future of telecommunication, quantum mechanics promise new…

Quantum Physics · Physics 2018-10-03 Fabian Furrer , William J. Munro

Message hiding, a technique that conceals secret message bits within a cover image, aims to achieve an optimal balance among message capacity, recovery accuracy, and imperceptibility. While convolutional neural networks have notably…

Computer Vision and Pattern Recognition · Computer Science 2025-08-18 Gao Yu , Qiu Xuchong , Ye Zihan

Specialised transformers-based models (such as BioBERT and BioMegatron) are adapted for the biomedical domain based on publicly available biomedical corpora. As such, they have the potential to encode large-scale biological knowledge. We…

Computation and Language · Computer Science 2022-12-22 Oskar Wysocki , Zili Zhou , Paul O'Regan , Deborah Ferreira , Magdalena Wysocka , Dónal Landers , André Freitas

The universal genetic code presents a fundamental paradox in molecular biology. Recent advances in synthetic biology have demonstrated that the code is remarkably flexible--organisms can survive with 61 codons instead of 64, natural…

Populations and Evolution · Quantitative Biology 2025-07-03 Marc Bara Iniesta

We show how extra entanglement shared between sender and receiver reduces the memory requirements for a general entanglement-assisted quantum convolutional code. We construct quantum convolutional codes with good error-correcting properties…

Quantum Physics · Physics 2009-03-24 Mark M. Wilde , Todd A. Brun

Coupling of transmon qubits to resonators that serve as storage for information provides alternative routes for quantum computing. Such a scheme paves the way for achieving high qubit connectivity, which is a great challenge in cQED…

Quantum Physics · Physics 2023-07-18 Gürkan Kartal , George Simion , Bart Sorée

Protection of the sensitive content is crucial for extensive information sharing. We present a technique of information concealing, based on introduction and maintenance of families of repeats. Repeats in DNA constitute a basic obstacle for…

Information Theory · Computer Science 2009-04-29 Lukas Kencl , Martin Loebl

Distributed quantum networks are not merely information conduits but intricate systems that embody the principles of quantum mechanics. In our study, we examine the underlying mechanisms of quantum connectivity within a distributed…

Networking and Internet Architecture · Computer Science 2025-03-07 Mst Shapna Akter , Md. Shazzad Hossain Shaon , Tasmin Karim , Md. Fahim Sultan , Emran Kanaan

DNA is a promising storage medium, but its stability and occurrence of Indel errors pose a significant challenge. The relative occurrence of Guanine(G) and Cytosine(C) in DNA is crucial for its longevity, and reverse complementary base…

Information Theory · Computer Science 2024-01-15 NallappaBhavithran G , Selvakumar R

Shared entanglement can significantly amplify classical correlations between systems interacting over a limited quantum channel. A natural avenue is to use entanglement of the same dimension as the channel because this allows for unitary…

DNA is a leading candidate as the next archival storage media due to its density, durability and sustainability. To read (and write) data DNA storage exploits technology that has been developed over decades to sequence naturally occurring…

Emerging Technologies · Computer Science 2022-05-12 Jasmine Quah , Omer Sella , Thomas Heinis