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Large Language Models (LLMs) have demonstrated strong capabilities in various natural language processing tasks; however, their application to graph-related problems remains limited, primarily due to scalability constraints and the absence…

Machine Learning · Computer Science 2025-05-08 Hyun Lee , Chris Yi , Maminur Islam , B. D. S. Aritra

Large Language Models (LLMs) hold significant promise for improving clinical decision support and reducing physician burnout by synthesizing complex, longitudinal cancer Electronic Health Records (EHRs). However, their implementation in…

Computation and Language · Computer Science 2026-01-12 Dongchen Li , Jitao Liang , Wei Li , Xiaoyu Wang , Longbing Cao , Kun Yu

Large Language Models (LLMs) are advancing at an amazing speed and have become indispensable across academia, industry, and daily applications. To keep pace with the status quo, this survey probes the core challenges that the rise of LLMs…

While large language models (LLMs) have become the de facto framework for literature-related tasks, they still struggle to function as domain-specific literature agents due to their inability to connect pieces of knowledge and reason across…

Digital Libraries · Computer Science 2026-03-03 Andreas Varvarigos , Ali Maatouk , Jiasheng Zhang , Ngoc Bui , Jialin Chen , Leandros Tassiulas , Rex Ying

The deployment of Large Language Models (LLMs) in high-stakes clinical settings demands rigorous and reliable evaluation. However, existing medical benchmarks remain static, suffering from two critical limitations: (1) data contamination,…

Artificial Intelligence · Computer Science 2026-02-12 Zhiling Yan , Dingjie Song , Zhe Fang , Yisheng Ji , Xiang Li , Quanzheng Li , Lichao Sun

The rapid development and dynamic nature of large language models (LLMs) make it difficult for conventional quantitative benchmarks to accurately assess their capabilities. We propose report cards, which are human-interpretable, natural…

Machine Learning · Computer Science 2024-09-04 Blair Yang , Fuyang Cui , Keiran Paster , Jimmy Ba , Pashootan Vaezipoor , Silviu Pitis , Michael R. Zhang

While Language Models (LMs) are the workhorses of NLP, their interplay with structured knowledge graphs (KGs) is still actively researched. Current methods for encoding such graphs typically either (i) linearize them for embedding with LMs…

Computation and Language · Computer Science 2024-06-04 Moritz Plenz , Anette Frank

Recent advances in Vision-Language Models (VLMs) have shown promising capabilities in interpreting visualized graph data, offering a new perspective for graph-structured reasoning beyond traditional Graph Neural Networks (GNNs). However,…

Artificial Intelligence · Computer Science 2026-04-27 Qihang Ai , Ruizhou Li , Menghui Wang , Haiyun Jiang

Legal dispute analysis is crucial for intelligent legal assistance systems. However, current LLMs face significant challenges in understanding complex legal concepts, maintaining reasoning consistency, and accurately citing legal sources.…

Artificial Intelligence · Computer Science 2025-09-03 Mingda Zhang , Na Zhao , Jianglong Qing , Qing xu , Kaiwen Pan , Ting luo

The ability to follow instructions is crucial for Large Language Models (LLMs) to handle various real-world applications. Existing benchmarks primarily focus on evaluating pure response quality, rather than assessing whether the response…

Computation and Language · Computer Science 2024-06-06 Yuxin Jiang , Yufei Wang , Xingshan Zeng , Wanjun Zhong , Liangyou Li , Fei Mi , Lifeng Shang , Xin Jiang , Qun Liu , Wei Wang

As LLM-powered agents have been used for high-stakes decision-making, such as clinical diagnosis, it becomes critical to develop reliable verification of their decisions to facilitate trustworthy deployment. Yet, existing verifiers usually…

Artificial Intelligence · Computer Science 2026-03-04 Yichi Zhang , Nabeel Seedat , Yinpeng Dong , Peng Cui , Jun Zhu , Mihaela van de Schaar

Multimodal Large Language Models (MLLMs) have demonstrated remarkable capabilities in representing and understanding diverse modalities. However, they typically focus on modality alignment in a pairwise manner while overlooking structural…

Machine Learning · Computer Science 2025-06-13 Jiajin Liu , Dongzhe Fan , Jiacheng Shen , Chuanhao Ji , Daochen Zha , Qiaoyu Tan

As Large Language Models (LLMs) become more powerful and autonomous, they increasingly face conflicts and dilemmas in many scenarios. We first summarize and taxonomize these diverse conflicts. Then, we model the LLM's preferences to make…

Artificial Intelligence · Computer Science 2026-03-17 Zhenheng Tang , Xiang Liu , Qian Wang , Eunsol Choi , Bo Li , Xiaowen Chu

A large-scale knowledge graph enhances reproducibility in biomedical data discovery by providing a standardized, integrated framework that ensures consistent interpretation across diverse datasets. It improves generalizability by connecting…

Methodology · Statistics 2024-10-11 Suqi Liu , Tianxi Cai , Xiaoou Li

We explore the hyperparameters and introduce a methodological framework to convert disease patterns from time series data of blood test results into correlation graphs for causal hypothesis exploration. The networks represent hypotheses…

Other Quantitative Biology · Quantitative Biology 2025-12-29 David Patrick Duys Montealegre , Alexander Fulton , Mahta Haghighat Ghahfarokhi , Abicumaran Uthamacumaran , Hector Zenil

This article analyzes the use of Large Language Models (LLMs) as support for the conceptual modeling of relational databases through the automatic generation of Entity-Relationship (ER) diagrams from natural language requirements. The…

Artificial Intelligence · Computer Science 2026-05-13 Arthur F. Siqueira , Carlos D. S. Nogueira , Eduarda Farias , Claudio E. C. Campelo , Júlia Menezes

In document classification, graph-based models effectively capture document structure, overcoming sequence length limitations and enhancing contextual understanding. However, most existing graph document representations rely on heuristics,…

Computation and Language · Computer Science 2025-08-05 Margarita Bugueño , Gerard de Melo

Large language models (LLMs) are largely motivated by their performance on popular topics and benchmarks at the time of their release. However, over time, contamination occurs due to significant exposure of benchmark data during training.…

Computation and Language · Computer Science 2026-03-20 Ja Young Lee , Mírian Silva , Mohamed Nasr , Shonda Witherspoon , Enzo Bozzani , Veronique Demers , Radha Ratnaparkhi , Hui Wu , Sara Rosenthal

Recent works on form understanding mostly employ multimodal transformers or large-scale pre-trained language models. These models need ample data for pre-training. In contrast, humans can usually identify key-value pairings from a form only…

Computation and Language · Computer Science 2023-05-09 Bhanu Prakash Voutharoja , Lizhen Qu , Fatemeh Shiri

Current Large Language Models (LLMs) benchmarks are often based on open-ended or close-ended QA evaluations, avoiding the requirement of human labor. Close-ended measurements evaluate the factuality of responses but lack expressiveness.…