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The intrinsic complexity of human biology presents ongoing challenges to scientific understanding. Researchers collaborate across disciplines to expand our knowledge of the biological interactions that define human life. AI methodologies…

While Large Language Models (LLMs) have shown exceptional generalization capabilities, their ability to process graph data, such as molecular structures, remains limited. To bridge this gap, this paper proposes Graph2Token, an efficient…

Machine Learning · Computer Science 2025-03-11 Runze Wang , Mingqi Yang , Yanming Shen

Large language models (LLMs) have achieved great success in many fields, and recent works have studied exploring LLMs for graph discriminative tasks such as node classification. However, the abilities of LLMs for graph generation remain…

Machine Learning · Computer Science 2024-03-22 Yang Yao , Xin Wang , Zeyang Zhang , Yijian Qin , Ziwei Zhang , Xu Chu , Yuekui Yang , Wenwu Zhu , Hong Mei

The integration of Large Language Models (LLMs) with Graph Representation Learning (GRL) marks a significant evolution in analyzing complex data structures. This collaboration harnesses the sophisticated linguistic capabilities of LLMs to…

Machine Learning · Computer Science 2024-02-12 Qiheng Mao , Zemin Liu , Chenghao Liu , Zhuo Li , Jianling Sun

The outstanding performance capabilities of large language model have driven the evolution of current AI system interaction patterns. This has led to considerable discussion within the Human-AI Interaction (HAII) community. Numerous studies…

Human-Computer Interaction · Computer Science 2026-04-02 Jiayang Li , Jiale Li

Vision-Language Models (VLMs) frequently misread values, hallucinate details, and confuse overlapping elements in charts. Current approaches rely solely on pixel interpretation, creating a Pixel-Only Bottleneck: agents treat interactive…

Computation and Language · Computer Science 2026-04-24 Yiyang Lu , Woong Shin , Ahmad Maroof Karimi , Feiyi Wang , Jie Ren , Evgenia Smirni

Knowledge graphs have emerged as an important model for studying complex multi-relational data. This has given rise to the construction of numerous large scale but incomplete knowledge graphs encoding information extracted from various…

Machine Learning · Computer Science 2018-07-24 Rakshit Trivedi , Bunyamin Sisman , Jun Ma , Christos Faloutsos , Hongyuan Zha , Xin Luna Dong

Understanding large-scale, complex software systems is a major challenge for developers, who spend a significant portion of their time on program comprehension. Traditional tools such as static visualizations and reverse engineering…

Software Engineering · Computer Science 2025-08-11 Yoseph Berhanu Alebachew

Health informatics research is characterized by diverse data modalities, rapid knowledge expansion, and the need to integrate insights across biomedical science, data analytics, and clinical practice. These characteristics make it…

Artificial Intelligence · Computer Science 2025-09-24 Yuxiao Cheng , Jinli Suo

The exponential growth of global academic output has confronted researchers and AI agents with an unprecedented ``information explosion,'' where fragmented and unstructured knowledge organization impedes deep interdisciplinary integration.…

Artificial Intelligence · Computer Science 2026-05-25 Shuofei Qiao , Yunxiang Wei , Jiazheng Fan , Bin Wu , Busheng Zhang , Mengru Wang , Yuqi Zhu , Ningyu Zhang , Keyan Ding , Qiang Zhang , Huajun Chen

Multivariate graphs are prolific across many fields, including transportation and neuroscience. A key task in graph analysis is the exploration of connectivity, to, for example, analyze how signals flow through neurons, or to explore how…

We present LinkQ, a system that leverages a large language model (LLM) to facilitate knowledge graph (KG) query construction through natural language question-answering. Traditional approaches often require detailed knowledge of a graph…

Computation and Language · Computer Science 2025-02-11 Harry Li , Gabriel Appleby , Ashley Suh

Knowledge graphs have proven successful in integrating heterogeneous data across various domains. However, there remains a noticeable dearth of research on their seamless integration among heterogeneous recommender systems, despite…

Information Retrieval · Computer Science 2025-01-08 Junhyuk Kwon , Seokho Ahn , Young-Duk Seo

Advances in voice-controlled assistants paved the way into the consumer market. For professional or industrial use, the capabilities of such assistants are too limited or too time-consuming to implement due to the higher complexity of data,…

Computation and Language · Computer Science 2020-07-28 Bekir Bayrak , Florian Giger , Christian Meurisch

Large language models (LLMs) have shown promise in simulating human-like social behaviors. Social graphs provide high-quality supervision signals that encode both local interactions and global network structure, yet they remain…

Social and Information Networks · Computer Science 2026-04-14 Jiarui Ji , Zehua Zhang , Zhewei Wei , Bin Tong , Guan Wang , Bo Zheng

The increasing complexity and scale of scientific datasets demand advanced tools for efficient discovery and exploration. Traditional search systems often fall short in addressing the multidimensional nature of data and their intricate…

Databases · Computer Science 2025-09-04 Pawandeep Kaur Betz , Tobias Hecking , Andreas Gerndt

API recommendation methods have evolved from literal and semantic keyword matching to query expansion and query clarification. The latest query clarification method is knowledge graph (KG)-based, but limitations include out-of-vocabulary…

Software Engineering · Computer Science 2023-09-29 Qing Huang , Zhenyu Wan , Zhenchang Xing , Changjing Wang , Jieshan Chen , Xiwei Xu , Qinghua Lu

Knowledge Graphs (KGs) have become increasingly common for representing large-scale linked data. However, their immense size has required graph learning systems to assist humans in analysis, interpretation, and pattern detection. While…

Artificial Intelligence · Computer Science 2024-02-12 Jeffrey Sardina , Luca Costabello , Christophe Guéret

Knowledge graphs, collectively as a knowledge network, have become critical tools for knowledge discovery in computable and explainable knowledge systems. Due to the semantic and structural complexities of biomedical data, these knowledge…

Other Quantitative Biology · Quantitative Biology 2025-09-29 Chunlei Wu , Hongfang Liu , Jason Flannick , Mark A. Musen , Andrew I. Su , Lawrence Hunter , Thomas M. Powers , Cathy H. Wu

Text-rich visual understanding-the ability to process environments where dense textual content is integrated with visuals-is crucial for multimodal large language models (MLLMs) to interact effectively with structured environments. To…

Computer Vision and Pattern Recognition · Computer Science 2024-11-07 Junpeng Liu , Tianyue Ou , Yifan Song , Yuxiao Qu , Wai Lam , Chenyan Xiong , Wenhu Chen , Graham Neubig , Xiang Yue