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This paper presents a new, parallel implementation of clustering and demonstrates its utility in greatly speeding up the process of identifying homologous proteins. Clustering is a technique to reduce the number of comparison needed to find…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-08-29 Stuart Byma , Akash Dhasade , Adrian Altenhoff , Christophe Dessimoz , James R. Larus

We present an I/O-efficient algorithm for computing similarity joins based on locality-sensitive hashing (LSH). In contrast to the filtering methods commonly suggested our method has provable sub-quadratic dependency on the data size.…

Data Structures and Algorithms · Computer Science 2017-03-29 Rasmus Pagh , Ninh Pham , Francesco Silvestri , Morten Stöckel

The rise of internet has resulted in an explosion of data consisting of millions of articles, images, songs, and videos. Most of this data is high dimensional and sparse. The need to perform an efficient search for similar objects in such…

Data Structures and Algorithms · Computer Science 2016-12-20 Raghav Kulkarni , Rameshwar Pratap

Small objects detection is a challenging task in computer vision due to its limited resolution and information. In order to solve this problem, the majority of existing methods sacrifice speed for improvement in accuracy. In this paper, we…

Computer Vision and Pattern Recognition · Computer Science 2018-11-28 Guimei Cao , Xuemei Xie , Wenzhe Yang , Quan Liao , Guangming Shi , Jinjian Wu

Similarity joins are important operations with a broad range of applications. In this paper, we study the problem of vector similarity join size estimation (VSJ). It is a generalization of the previously studied set similarity join size…

Databases · Computer Science 2011-04-19 Hongrae Lee , Raymond T. Ng , Kyuseok Shim

Similarity search is one of the most fundamental computations that are regularly performed on ever-increasing protein datasets. Scalability is of paramount importance for uncovering novel phenomena that occur at very large scales. We…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-03-06 Oguz Selvitopi , Saliya Ekanayake , Giulia Guidi , Muaaz G. Awan , Georgios A. Pavlopoulos , Ariful Azad , Nikos Kyrpides , Leonid Oliker , Katherine Yelick , Aydın Buluç

Clustering plays a crucial role in computer science, facilitating data analysis and problem-solving across numerous fields. By partitioning large datasets into meaningful groups, clustering reveals hidden structures and relationships within…

Databases · Computer Science 2026-02-19 Aryan Esmailpour , Stavros Sintos

Clustering techniques are very attractive for extracting and identifying patterns in datasets. However, their application to very large spatial datasets presents numerous challenges such as high-dimensionality data, heterogeneity, and high…

Databases · Computer Science 2018-02-27 Malika Bendechache , Nhien-An Le-Khac , M-Tahar Kechadi

We study the problem of discovering joinable datasets at scale. This is, how to automatically discover pairs of attributes in a massive collection of independent, heterogeneous datasets that can be joined. Exact (e.g., based on distinct…

Databases · Computer Science 2020-12-07 Javier Flores , Sergi Nadal , Oscar Romero

DBSCAN is a typically used clustering algorithm due to its clustering ability for arbitrarily-shaped clusters and its robustness to outliers. Generally, the complexity of DBSCAN is O(n^2) in the worst case, and it practically becomes more…

Databases · Computer Science 2018-01-23 Thapana Boonchoo , Xiang Ao , Qing He

Joining trajectory datasets is a significant operation in mobility data analytics and the cornerstone of various methods that aim to extract knowledge out of them. In the era of Big Data, the production of mobility data has become massive…

Databases · Computer Science 2020-02-07 Panagiotis Tampakis , Christos Doulkeridis , Nikos Pelekis , Yannis Theodoridis

High dimension low sample size statistical analysis is important in a wide range of applications. In such situations, the highly appealing discrimination method, support vector machine, can be improved to alleviate data piling at the…

Optimization and Control · Mathematics 2017-08-18 Xin Yee Lam , J. S. Marron , Defeng Sun , Kim-Chuan Toh

Measuring similarity between two objects is the core operation in existing clustering algorithms in grouping similar objects into clusters. This paper introduces a new similarity measure called point-set kernel which computes the similarity…

Machine Learning · Computer Science 2022-01-07 Kai Ming Ting , Jonathan R. Wells , Ye Zhu

We study the problem of discovering joinable datasets at scale. We approach the problem from a learning perspective relying on profiles. These are succinct representations that capture the underlying characteristics of the schemata and data…

Databases · Computer Science 2023-06-01 Sergi Nadal , Raquel Panadero , Javier Flores , Oscar Romero

We consider running-time optimization for band-joins in a distributed system, e.g., the cloud. To balance load across worker machines, input has to be partitioned, which causes duplication. We explore how to resolve this tension between…

Databases · Computer Science 2020-04-15 Rundong Li , Wolfgang Gatterbauer , Mirek Riedewald

To process a large volume of data, modern data management systems use a collection of machines connected through a network. This paper looks into the feasibility of scaling up such a shared-nothing system while processing a compute- and…

Databases · Computer Science 2018-04-26 Abhirup Chakraborty

Vector search underpins modern AI applications by supporting approximate nearest neighbor (ANN) queries over high-dimensional embeddings in tasks like retrieval-augmented generation (RAG), recommendation systems, and multimodal search.…

Databases · Computer Science 2026-05-19 Shurui Zhong , Dingheng Mo , Siqiang Luo

Approximate Nearest Neighbor Search (ANNS) is essential for various data-intensive applications, including recommendation systems, image retrieval, and machine learning. Scaling ANNS to handle billions of high-dimensional vectors on a…

Databases · Computer Science 2025-06-18 Qian Xu , Feng Zhang , Chengxi Li , Lei Cao , Zheng Chen , Jidong Zhai , Xiaoyong Du

Similarity matching and join of time series data streams has gained a lot of relevance in today's world that has large streaming data. This process finds wide scale application in the areas of location tracking, sensor networks, object…

Databases · Computer Science 2013-12-11 R H Vishwanath , T V Samartha , K C Srikantaiah , K R Venugopal , L M Patnaik

Approximate Nearest Neighbor Search (ANNS), as the core of vector databases (VectorDBs), has become widely used in modern AI and ML systems, powering applications from information retrieval to bio-informatics. While graph-based ANNS methods…

Machine Learning · Computer Science 2025-10-07 Dingyi Kang , Dongming Jiang , Hanshen Yang , Hang Liu , Bingzhe Li