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Populations of heterogeneous cells play an important role in many biological systems. In this paper we consider systems where each cell can be modelled by an ordinary differential equation. To account for heterogeneity, parameter values are…

Quantitative Methods · Quantitative Biology 2009-09-27 Steffen Waldherr , Jan Hasenauer , Frank Allgöwer

One of the mechanisms that ensure cancer robustness is tumor heterogeneity, and its effects on tumor cells dynamics have to be taken into account when studying cancer progression. There is no unifying theoretical framework in mathematical…

Tissues and Organs · Quantitative Biology 2007-05-23 Georgy P. Karev , Artem S. Novozhilov , Eugene V. Koonin

The size and shape of a large variety of polymeric particles, including biological cells, star polymers, dendrimes, and microgels, depend on the applied stresses as the particles are extremely soft. In high-density suspensions these…

Statistical Mechanics · Physics 2018-04-11 Yan-Wei Li , Massimo Pica Ciamarra

When analyzing parametric statistical models, a useful approach consists in modeling geometrically the parameter space. However, even for very simple and commonly used hierarchical models like statistical mixtures or stochastic deep neural…

Machine Learning · Computer Science 2021-12-08 Pascal Mattia Esser , Frank Nielsen

We deal with a degenerate model in divergence form describing the dynamics of a population depending on time, on age and on space. We assume that the degeneracy occurs in the interior of the spatial domain and we focus on null…

Analysis of PDEs · Mathematics 2019-04-16 Genni Fragnelli

Tissue dynamics and collective cell motion are crucial biological processes. Their biological machinery is mostly known, and simulation models such as the "active vertex model" (AVM) exist and yield reasonable agreement with experimental…

Soft Condensed Matter · Physics 2023-11-16 Gloria Triguero-Platero , Falko Ziebert , Luis L. Bonilla

Tissue homeostasis, the biological process of maintaining a steady state in tissue via control of cell proliferation, death, and metabolic function, is essential for the development, growth, maintenance, and proper function of living…

Biological Physics · Physics 2025-01-15 KVS Chaithanya , Jan Rozman , Andrej Košmrlj , Rastko Sknepnek

The presence of prestrain can have a tremendous effect on the mechanical behavior of slender structures. Prestrained elastic plates show spontaneous bending in equilibrium -- a property that makes such objects relevant for the fabrication…

Analysis of PDEs · Mathematics 2023-01-18 Klaus Böhnlein , Stefan Neukamm , David Padilla-Garza , Oliver Sander

The paper focuses on the stiffness modeling of parallel manipulators composed of non-perfect serial chains, whose geometrical parameters differ from the nominal ones. In these manipulators, there usually exist essential internal…

Robotics · Computer Science 2012-11-27 Alexandr Klimchik , Anatol Pashkevich , Damien Chablat

A continuum description is built to characterize the stationary and transient deformations of confluent tissues subject to heterogeneous activities. By defining a coarse-grained texture matrix field to represent the shape and size of cells,…

Biological Physics · Physics 2023-08-10 Fernanda Pérez-Verdugo , Rodrigo Soto

In this work we use cosmography to alleviate the degeneracy among cosmological models, proposing a way to parameterize matter and dark energy in terms of cosmokinematics quantities. The recipe of using cosmography allows to expand…

General Relativity and Quantum Cosmology · Physics 2015-12-23 Orlando Luongo , Giovanni Battista Pisani , Antonio Troisi

We introduce a new method which resolves the problem of regularity and compactness of entropy solutions for nonlinear degenerate parabolic equations under non-degeneracy conditions on the sphere. In particular, we address a problem of…

Analysis of PDEs · Mathematics 2023-09-06 Marko Erceg , Darko Mitrović

Computer simulation models are widely used to study complex physical systems. A related fundamental topic is the inverse problem, also called calibration, which aims at learning about the values of parameters in the model based on…

Methodology · Statistics 2024-01-03 Yang Li , Shifeng Xiong

In this paper homogenization of a mathematical model for plant tissue biomechanics is presented. The microscopic model constitutes a strongly coupled system of reaction-diffusion-convection equations for chemical processes in plant cells,…

Analysis of PDEs · Mathematics 2017-08-24 Andrey Piatnitski , Mariya Ptashnyk

We are interested in evolution phenomena on star-like networks composed of several branches which vary considerably in physical properties. The initial boundary value problem for singularly perturbed hyperbolic differential equation on a…

Analysis of PDEs · Mathematics 2017-04-19 Yuriy Golovaty , Volodymyr Flyud

A widely employed method for estimating the mass of stellar systems with apparent spherical symmetry is dynamical modelling using the spherically symmetric Jeans equation. Unfortunately this approach suffers from a degeneracy between the…

Astrophysics of Galaxies · Physics 2015-06-19 Foivos I. Diakogiannis , Geraint F. Lewis , Rodrigo A. Ibata

In a previous work [J. Chem. Phys. 155, 244111 (2021)], we found counterexamples to the fundamental Hohenberg-Kohn theorem from density-functional theory in finite-lattice systems represented by graphs. Here, we demonstrate that this only…

Quantum Physics · Physics 2024-02-07 Markus Penz , Robert van Leeuwen

The vertex model is a popular framework for modelling tightly packed biological cells, such as confluent epithelia. Cells are described by convex polygons tiling the plane and their equilibrium is found by minimizing a global mechanical…

Biological Physics · Physics 2021-03-17 Oliver E. Jensen , Emma Johns , Sarah Woolner

General relativity (GR) has been well tested up to solar system scales, but it is much less certain that standard gravity remains an accurate description on the largest, that is, cosmological, scales. Many extensions to GR have been studied…

Cosmology and Nongalactic Astrophysics · Physics 2018-11-07 Austin Peel , Valeria Pettorino , Carlo Giocoli , Jean-Luc Starck , Marco Baldi

The aim of this work is the numerical homogenization of a parabolic problem with several time and spatial scales using the heterogeneous multiscale method. We replace the actual cell problem with an alternate one, using Dirichlet boundary…

Numerical Analysis · Mathematics 2022-10-11 Daniel Eckhardt , Barbara Verfürth