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Tree covering is a technique for decomposing a tree into smaller-sized trees with desirable properties, and has been employed in various succinct data structures. However, significant hurdles stand in the way of a practical implementation…

Data Structures and Algorithms · Computer Science 2024-08-09 Kou Hamada , Sankardeep Chakraborty , Seungbum Jo , Takuto Koriyama , Kunihiko Sadakane , Srinivasa Rao Satti

We discuss the performance characteristics of using the modification of the tree code suggested by Barnes \citep{1990JCoPh..87..161B} in the context of the TreePM code. The optimisation involves identifying groups of particles and using…

Astrophysics · Physics 2015-05-13 Nishikanta Khandai , J. S. Bagla

Storage rings have been employed over three decades in various kinds of nuclear and atomic physics experiments with highly charged ions. Storage ring operation and precision physics experiments benefit from the availability of beam cooling…

Nuclear Experiment · Physics 2020-10-28 Markus Steck , Yuri A. Litvinov

Tree ensembles are flexible predictive models that can capture relevant variables and to some extent their interactions in a compact and interpretable manner. Most algorithms for obtaining tree ensembles are based on versions of boosting or…

Machine Learning · Statistics 2020-02-21 Gitesh Dawer , Yangzi Guo , Adrian Barbu

Developing a robust algorithm for automatic individual tree crown (ITC) detection from laser scanning datasets is important for tracking the responses of trees to anthropogenic change. Such approaches allow the size, growth and mortality of…

Computer Vision and Pattern Recognition · Computer Science 2019-10-04 Jonathan Williams , Carola-Bibiane Schönlieb , Tom Swinfield , Juheon Lee , Xiaohao Cai , Lan Qie , David A. Coomes

We present TreeCol, a new and efficient tree-based scheme to calculate column densities in numerical simulations. Knowing the column density in any direction at any location in space is a prerequisite for modelling the propagation of…

Astrophysics of Galaxies · Physics 2015-05-30 Paul C. Clark , Simon C. O. Glover , Ralf S. Klessen

We implement the dynamical Ising model on the large scale architecture of white matter connections of healthy subjects in the age range 4-85 years, and analyze the dynamics in terms of the synergy, a quantity measuring the extent to which…

Neurons and Cognition · Quantitative Biology 2020-05-15 Davide Nuzzi , Mario Pellicoro , Leonardo Angelini , Daniele Marinazzo , Sebastiano Stramaglia

In some entertainment and virtual reality applications, it is necessary to model and draw the real world realistically, so as to improve the fidelity of natural scenes and make users have a better sense of immersion. However, due to the…

Graphics · Computer Science 2022-04-08 Yinhui Yang , Rui Wang , Yuchi Huo

Accurately estimating forest biomass is crucial for global carbon cycle modelling and climate change mitigation. Tree height, a key factor in biomass calculations, can be measured using Synthetic Aperture Radar (SAR) technology. This study…

Computer Vision and Pattern Recognition · Computer Science 2024-09-10 Grace Colverd , Jumpei Takami , Laura Schade , Karol Bot , Joseph A. Gallego-Mejia

The interplay of topological constraints and persistence length of ring polymers in their own melt is investigated by means of dynamical Monte Carlo simulations of a three dimensional lattice model. We ask if the results are consistent with…

Statistical Mechanics · Physics 2009-10-31 M. Muller , J. P. Wittmer , M. E. Cates

In the research scope of forest stand self-thinning, the analysis reveals a broad picture in which the -3/2 rule takes a definite and special place. The application of the simple geometrical model to the Douglas-fir and Scots pine data…

Populations and Evolution · Quantitative Biology 2014-10-10 Vladimir L. Gavrikov

Random Forests (RF) is a popular machine learning method for classification and regression problems. It involves a bagging application to decision tree models. One of the primary advantages of the Random Forests model is the reduction in…

Machine Learning · Statistics 2022-07-06 Sai K Popuri

The microtubule network, an important part of the cytoskeleton, is constantly remodeled by alternating phases of growth and shrinkage of individual filaments. Plus-end tracking proteins (+TIPs) interact with the microtubule and in many…

Biological Physics · Physics 2009-12-24 M. Ebbinghaus , L. Santen

Using Monte Carlo simulations, we have studied isothermal aging of three-dimensional Ising spin-glass model focusing on quasi-equilibrium behavior of the spin auto-correlation function. Weak violation of the time translational invariance in…

Disordered Systems and Neural Networks · Physics 2009-10-31 Tatsuo Komori , Hajime Yoshino , Hajime Takayama

We introduce the Virgo Consortium's EAGLE project, a suite of hydrodynamical simulations that follow the formation of galaxies and black holes in representative volumes. We discuss the limitations of such simulations in light of their…

We present results obtained from a set of cosmological hydrodynamic simulations of galaxy clusters, aimed at comparing predictions with observational data on the diversity between cool-core (CC) and non-cool-core (NCC) clusters. Our…

Cosmology and Nongalactic Astrophysics · Physics 2015-11-04 E. Rasia , S. Borgani , G. Murante , S. Planelles , A. M. Beck , V. Biffi , C. Ragone-Figueroa , G. L. Granato , L. K. Steinborn , K. Dolag

Coupled natural systems are generally modeled at multiple abstraction levels. Both structural scale and behavioral complexity of these models are determinants in the kinds of questions that can be posed and answered. As scale and complexity…

Computational Engineering, Finance, and Science · Computer Science 2018-07-23 Hessam S. Sarjoughian , William A. Boyd , Miguel F. Acevedo

Saplings are key indicators of forest regeneration and overall forest health. However, their fine-scale architectural traits are difficult to capture with existing 3D sensing methods, which make quantitative evaluation difficult.…

Empirical observations suggest that in pure even-aged forests, the mean diameter of forest trees (D, diameter at breast height, 1.3 m above ground) tends to remain a constant proportion of stand height (H, average height of the largest…

Quantitative Methods · Quantitative Biology 2009-08-23 Jerome K Vanclay

We report on the energy-momentum correlators obtained with recent numerical simulations of the Abelian Higgs model, essential for the computation of cosmic microwave background and matter perturbations of cosmic strings. Due to significant…

Cosmology and Nongalactic Astrophysics · Physics 2017-02-28 David Daverio , Mark Hindmarsh , Martin Kunz , Joanes Lizarraga , Jon Urrestilla