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Related papers: MolMark: Safeguarding Molecular Structures through…

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With the increasing demand for the right to be forgotten, machine unlearning (MU) has emerged as a vital tool for enhancing trust and regulatory compliance by enabling the removal of sensitive data influences from machine learning (ML)…

Cryptography and Security · Computer Science 2025-08-15 Yuhao Sun , Yihua Zhang , Gaowen Liu , Hongtao Xie , Sijia Liu

Deep generative models for graph-structured data offer a new angle on the problem of chemical synthesis: by optimizing differentiable models that directly generate molecular graphs, it is possible to side-step expensive search procedures in…

Machine Learning · Statistics 2022-09-28 Nicola De Cao , Thomas Kipf

Potential harms of large language models can be mitigated by watermarking model output, i.e., embedding signals into generated text that are invisible to humans but algorithmically detectable from a short span of tokens. We propose a…

Machine Learning · Computer Science 2024-05-03 John Kirchenbauer , Jonas Geiping , Yuxin Wen , Jonathan Katz , Ian Miers , Tom Goldstein

Molecular docking is an important tool for structure-based drug design, accelerating the efficiency of drug development. Complex and dynamic binding processes between proteins and small molecules require searching and sampling over a wide…

Chemical Physics · Physics 2024-02-23 Runqiu Shu , Bowen Liu , Zhaoping Xiong , Xiaopeng Cui , Yunting Li , Wei Cui , Man-Hong Yung , Nan Qiao

Artificial intelligence (AI) is transforming scientific research, with explainable AI methods like concept-based models (CMs) showing promise for new discoveries. However, in molecular science, CMs are less common than black-box models like…

Artificial Intelligence · Computer Science 2024-12-17 Zimin Zhang , Qianli Wu , Botao Xia , Fang Sun , Ziniu Hu , Yizhou Sun , Shichang Zhang

Watermarking has become a plausible candidate for ownership verification and intellectual property protection of deep neural networks. Regarding image classification neural networks, current watermarking schemes uniformly resort to backdoor…

Cryptography and Security · Computer Science 2022-04-12 Fangqi Li , Shilin Wang

Watermarking by altering token sampling probabilities based on red-green list is a promising method for tracing the origin of text generated by large language models (LLMs). However, existing watermark methods often struggle with a…

Cryptography and Security · Computer Science 2025-05-21 Zongqi Wang , Tianle Gu , Baoyuan Wu , Yujiu Yang

Generating precise 3D molecular geometries is crucial for drug discovery and material science. While prior efforts leverage 1D representations like SELFIES to ensure molecular validity, they fail to fully exploit the rich chemical knowledge…

Machine Learning · Computer Science 2025-12-15 Zhanpeng Chen , Weihao Gao , Shunyu Wang , Yanan Zhu , Hong Meng , Yuexian Zou

There are many ways to represent a molecule as input to a machine learning model and each is associated with loss and retention of certain kinds of information. In the interest of preserving three-dimensional spatial information, including…

Machine Learning · Computer Science 2019-12-11 Jocelyn Sunseri , David Ryan Koes

The intellectual property (IP) of Deep neural networks (DNNs) can be easily ``stolen'' by surrogate model attack. There has been significant progress in solutions to protect the IP of DNN models in classification tasks. However, little…

Cryptography and Security · Computer Science 2021-08-06 Jie Zhang , Dongdong Chen , Jing Liao , Han Fang , Zehua Ma , Weiming Zhang , Gang Hua , Nenghai Yu

Despite the tremendous success, deep neural networks are exposed to serious IP infringement risks. Given a target deep model, if the attacker knows its full information, it can be easily stolen by fine-tuning. Even if only its output is…

Computer Vision and Pattern Recognition · Computer Science 2021-03-09 Jie Zhang , Dongdong Chen , Jing Liao , Weiming Zhang , Huamin Feng , Gang Hua , Nenghai Yu

Machine learning (ML) offers considerable promise for the design of new molecules and materials. In real-world applications, the design problem is often domain-specific, and suffers from insufficient data, particularly labeled data, for ML…

Chemical Physics · Physics 2025-02-04 Ming Han , Ge Sun , Juan J. de Pablo

Digital image watermarking is the process of embedding and extracting a watermark covertly on a cover-image. To dynamically adapt image watermarking algorithms, deep learning-based image watermarking schemes have attracted increased…

Multimedia · Computer Science 2020-07-07 Xin Zhong , Pei-Chi Huang , Spyridon Mastorakis , Frank Y. Shih

As there are increasing needs of sharing data for machine learning, there is growing attention for the owners of the data to claim the ownership. Visible watermarking has been an effective way to claim the ownership of visual data, yet the…

Cryptography and Security · Computer Science 2019-06-05 Sanghyun Hong , Tae-hoon Kim , Tudor Dumitraş , Jonghyun Choi

While deep learning has revolutionized computer-aided drug discovery, the AI community has predominantly focused on model innovation and placed less emphasis on establishing best benchmarking practices. We posit that without a sound model…

This paper introduces RoSeMary, the first-of-its-kind ML/Crypto codesign watermarking framework that regulates LLM-generated code to avoid intellectual property rights violations and inappropriate misuse in software development.…

Cryptography and Security · Computer Science 2025-02-11 Ruisi Zhang , Neusha Javidnia , Nojan Sheybani , Farinaz Koushanfar

LLMs now exhibit human-like skills in various fields, leading to worries about misuse. Thus, detecting generated text is crucial. However, passive detection methods are stuck in domain specificity and limited adversarial robustness. To…

Computation and Language · Computer Science 2023-05-17 Xi Yang , Kejiang Chen , Weiming Zhang , Chang Liu , Yuang Qi , Jie Zhang , Han Fang , Nenghai Yu

The idea of using deep-learning-based molecular generation to accelerate discovery of drug candidates has attracted extraordinary attention, and many deep generative models have been developed for automated drug design, termed molecular…

Biomolecules · Quantitative Biology 2024-05-01 Odin Zhang , Haitao Lin , Hui Zhang , Huifeng Zhao , Yufei Huang , Yuansheng Huang , Dejun Jiang , Chang-yu Hsieh , Peichen Pan , Tingjun Hou

This paper proposes DeepMarks, a novel end-to-end framework for systematic fingerprinting in the context of Deep Learning (DL). Remarkable progress has been made in the area of deep learning. Sharing the trained DL models has become a trend…

Cryptography and Security · Computer Science 2018-04-11 Huili Chen , Bita Darvish Rohani , Farinaz Koushanfar

Invisible image watermarking can protect image ownership and prevent malicious misuse of visual generative models. However, existing generative watermarking methods are mainly designed for diffusion models while watermarking for…

Computer Vision and Pattern Recognition · Computer Science 2025-05-21 Yu Tong , Zihao Pan , Shuai Yang , Kaiyang Zhou