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We present a theoretical study aiming at model fitting for sensory neurons. Conventional neural network training approaches are not applicable to this problem due to lack of continuous data. Although the stimulus can be considered as a…

Neurons and Cognition · Quantitative Biology 2017-09-28 R. Ozgur Doruk , Kechen Zhang

The simulation of human neurons and neurotransmission mechanisms has been realized in deep neural networks based on the theoretical implementations of activation functions. However, recent studies have reported that the threshold potential…

Machine Learning · Computer Science 2023-05-11 Kyungsu Lee , Jaeseung Yang , Haeyun Lee , Jae Youn Hwang

Here we characterized an information measure for cell polarity that applies to non-motile cells responding to a chemical gradient. The central idea is that polarization represents information about the direction of the gradient. We applied…

Cell Behavior · Quantitative Biology 2025-04-14 Tau-Mu Yi

Elements of neural networks, both biological and artificial, can be described by their selectivity for specific cognitive features. Understanding these features is important for understanding the inner workings of neural networks. For a…

Neural and Evolutionary Computing · Computer Science 2026-04-28 Nikita Pospelov , Andrei Chertkov , Maxim Beketov , Ivan Oseledets , Konstantin Anokhin

We study the ultrasensitivity of multisite binding processes where ligand molecules can bind to several binding sites, considering more particularly recent models involving complex chemical reactions in phosphorylation systems such as…

Subcellular Processes · Quantitative Biology 2016-05-02 Michaël Dougoud , Christian Mazza , Laura Vinckenbosch

HIF (Hypoxia Inducible Factor) is an oxygen-regulated transcription factor that mediates the intracellular response to hypoxia in human cells. There is increasing evidence that cell signaling pathways encode temporal information, and thus…

Cell Behavior · Quantitative Biology 2014-09-23 Joseph Leedale , Anne Herrmann , James Bagnall , Andreas Fercher , Dmitri Papkovsky , Violaine Sée , Rachel N. Bearon

Threshold models of global cascades have been extensively used to model real-world collective behavior, such as the contagious spread of fads and the adoption of new technologies. A common property of those cascade models is that a…

Social and Information Networks · Computer Science 2016-01-18 Teruyoshi Kobayashi

In this report trial-to-trial variations in the synchronized responses of neural networks are offered as evidence for excitation-inhibition ratio being a dynamic variable over time scales of minutes. Synchronized network responses to…

Neurons and Cognition · Quantitative Biology 2015-01-05 Netta Haroush , Shimon Marom

With increasing interest in millimeter wave wireless communications, investigations on interactions between the human body and millimeter wave devices are becoming important. This paper gives examples of current regulatory requirements, and…

Emerging Technologies · Computer Science 2015-08-21 Ting Wu , Theodore S. Rappaport , Christopher M. Collins

Biochemical signalling cascades transduce extracellular stimuli into cellular responses through sequences of discrete, node-to-node activations. While signal fidelity depends critically on local interaction kinetics, the mechanisms…

Dynamical Systems · Mathematics 2026-04-20 Chathranee Jayathilaka , Mark B. Flegg

We studied the impact of a dynamical threshold on the f-I curve-the relationship between the input and the firing rate of a neuron-in the presence of background synaptic inputs. First, we found that, while the leaky integrate-and-fire model…

Neurons and Cognition · Quantitative Biology 2009-11-13 Ryota Kobayashi

Abnormal electrical activity from the boundaries of ischemic cardiac tissue is recognized as one of the major causes in generation of ischemia-reperfusion arrhythmias. Here we present theoretical analysis of the waves of electrical activity…

Tissues and Organs · Quantitative Biology 2015-05-19 Vadim N. Biktashev , Irina V. Biktasheva , Narine A. Sarvazyan

We are interested in the threshold phenomena for propagation in nonlocal diffusion equations with some compactly supported initial data. In the so-called bistable and ignition cases, we provide the first quantitative estimates for such…

Analysis of PDEs · Mathematics 2022-01-06 Matthieu Alfaro , Arnaud Ducrot , Hao Kang

Control strategy for suppression of spiral-wave in a 2-D model of an excitable media is developed with application to the cardiac system. The controller which incorporates a finite number of actuators (electrodes) assures the establishment…

Optimization and Control · Mathematics 2014-10-03 Yelena Smagina , Moshe Sheintuch

A computational theory for classification of natural biosonar targets is developed based on the properties of an example stimulus ensemble. An extensive set of echoes (84 800) from four different foliages was transcribed into a spike code…

Biological Physics · Physics 2007-05-23 Rolf Mueller

Threshold based models have been widely used in characterizing collective behavior on social networks. An individual's threshold indicates the minimum level of influence that must be exerted, by other members of the population engaged in…

Social and Information Networks · Computer Science 2014-05-29 Srinivasan Venkatramanan , Anurag Kumar

We derive macroscopic equations for a generalized contact process that is inspired by a neuronal integrate and fire model on the lattice $\mathbb{Z}^d$. The states at each lattice site can take values in $0,\ldots,k$. These can be…

Probability · Mathematics 2023-01-25 Logan Chariker , Anna De Masi , Joel L. Lebowitz , Errico Presutti

Thalamic relay cells fire action potentials that transmit information from retina to cortex. The amount of information that spike trains encode is usually estimated from the precision of spike timing with respect to the stimulus. Sensory…

It is known that mechanical interactions couple a cell to its neighbors, enabling a feedback loop to regulate tissue growth. However, the interplay between cell-cell adhesion strength, local cell density and force fluctuations in regulating…

Soft Condensed Matter · Physics 2020-02-12 Abdul Malmi-Kakkada , Xin Li , Sumit Sinha , D. Thirumalai

Local patterns of excitation and inhibition that can generate neural waves are studied as a computational mechanism underlying the organization of neuronal tunings. Sparse coding algorithms based on networks of excitatory and inhibitory…

Neurons and Cognition · Quantitative Biology 2022-05-30 Leon Lufkin , Ashish Puri , Ganlin Song , Xinyi Zhong , John Lafferty
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