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A dynamical picture of phylogenetic evolution is given in terms of Markov models on a state space, comprising joint probability distributions for character types of taxonomic classes. Phylogenetic branching is a process which augments the…

Populations and Evolution · Quantitative Biology 2009-11-10 P. D. Jarvis , J. D. Bashford , J. G. Sumner

Competition indices are models frequently used in ecology to account for the impact of density and resource distribution on the growth of a plant population. They allow to define simple individual-based models, by integrating information…

Analysis of PDEs · Mathematics 2022-07-06 Antonin Della Noce , Paul-Henry Cournède

A model of interacting random walkers is presented and shown to give rise to patterns consisting in periodic arrangements of fluctuating particle clusters. The model represents biological individuals that die or reproduce at rates depending…

Statistical Mechanics · Physics 2009-11-10 Cristobal Lopez , Emilio Hernandez-Garcia

In cancer, treatment failure and disease recurrence have been associated with small subpopulations of cancer cells with a stem-like phenotype. In this paper, we develop and investigate a phenotype-structured model of solid tumour growth in…

Cell Behavior · Quantitative Biology 2021-01-15 Giulia L. Celora , Helen M. Byrne , Christos Zois , Panos G. Kevrekidis

The coexistence of multiple phytoplankton species despite their reliance on similar resources is often explained with mean-field models assuming mixed populations. In reality, observations of phytoplankton indicate spatial aggregation at…

Populations and Evolution · Quantitative Biology 2024-04-23 Coralie Picoche , William R. Young , Frédéric Barraquand

We examine to what extent the tempo and mode of environmental fluctuations matter for the growth of structured populations. The models are switching, linear ordinary differential equations $x'(t)=A(\sigma(\omega t))x(t)$ where…

Populations and Evolution · Quantitative Biology 2024-08-22 Pierre Monmarché , Sebastian J. Schreiber , Édouard Strickler

It is becoming more and more clear that complex networks present remarkable large fluctuations. These fluctuations may manifest differently according to the given model. In this paper we re-consider hidden variable models which turn out to…

Disordered Systems and Neural Networks · Physics 2014-02-19 Massimo Ostilli

We study the long time behavior of a parabolic Lotka-Volterra type equation considering a time-periodic growth rate with non-local competition. Such equation describes the dynamics of a phenotypically struc-tured population under the effect…

Analysis of PDEs · Mathematics 2019-04-22 Susely Figueroa Iglesias , Sepideh Mirrahimi

We study population dynamics through a general growth/degrowth-fragmentation process, with resource consumption and unbounded growth/degrowth, birth and death rates. Our model is structured in a positive trait called energy (which is a…

Probability · Mathematics 2026-03-24 Virgile Brodu

We consider a system of interacting diffusions labeled by a geographic space that is given by the hierarchical group $\Omega_N$ of order $N\in\mathbb{N}$. Individuals live in colonies and are subject to resampling and migration as long as…

Probability · Mathematics 2021-10-07 Andreas Greven , Frank den Hollander , Margriet Oomen

A rigorous understanding of how multicellular behaviors arise from the actions of single cells requires quantitative frameworks that bridge the gap between genetic circuits, the arrangement of cells in space, and population-level behaviors.…

Molecular Networks · Quantitative Biology 2016-02-18 Théo Maire , Hyun Youk

Epochal dynamics, in which long periods of stasis in an evolving population are punctuated by a sudden burst of change, is a common behavior in both natural and artificial evolutionary processes. We analyze the population dynamics for a…

adap-org · Physics 2007-05-23 Erik van Nimwegen , James P. Crutchfield

Plant and animal cells are commonly understood as acquiring specialized functions through differentiation and asymmetric division. However, unique capabilities are also acquired when two or more cells fuse together, mixing cytoplasmic and…

Biological Physics · Physics 2019-06-04 Jesse L. Silverberg , Pei Ying Ng , Roland Baron , Peng Yin

We study time continuous branching processes with exponentially distributed lifetimes, with two types of cells that proliferate according to binary fission. A range of possible system dynamics are considered, each of which is characterized…

Probability · Mathematics 2022-04-27 Nam H Nguyen , Marek Kimmel

We study the evolution leading to (or regressing from) a large fluctuation in a Statistical Mechanical system. We introduce and study analytically a simple model of many identically and independently distributed microscopic variables $n_m$…

Statistical Mechanics · Physics 2017-03-28 Federico Corberi

Most theories of evolutionary diversification are based on equilibrium assumptions: they are either based on optimality arguments involving static fitness landscapes, or they assume that populations first evolve to an equilibrium state…

Populations and Evolution · Quantitative Biology 2017-02-07 Iaroslav Ispolatov , Vaibhav Madhok , Michael Doebeli

We construct a pathwise formulation for a multi-type age-structured population dynamics, which involves an age-dependent cell replication and transition of gene- or phenotypes. By employing the formulation, we derive a variational…

Statistical Mechanics · Physics 2019-01-16 Yuki Sughiyama , So Nakashima , Tetsuya J. Kobayashi

The logistic equation is ubiquitous in applied mathematics as a minimal model of saturating growth. Here, we examine a broad generalisation of the logistic growth model to discretely structured populations, motivated by examples that range…

Populations and Evolution · Quantitative Biology 2025-05-15 Benjamin J. Walker , Helen M. Byrne

Mechanisms leading to speciation are a major focus in evolutionary biology. In this paper, we present and study a stochastic model of population where individuals, with type a or A, are equivalent from ecological, demographical and spatial…

Populations and Evolution · Quantitative Biology 2017-04-20 Camille Coron , Manon Costa , Hélène Leman , Charline Smadi

We develop a Fokker-Planck theory of tissue growth with three types of cells (symmetrically dividing, asymmetrically dividing and non-dividing) as main agents to study the growth dynamics of human cerebral organoids. Fitting the theory to…

Neurons and Cognition · Quantitative Biology 2024-06-28 Egor I. Kiselev , Florian G. Pflug , Arndt von Haeseler
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