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Living systems operate in a critical dynamical regime -- between order and chaos -- where they are both resilient to perturbation, and flexible enough to evolve. To characterize such critical dynamics, the established 'structural theory' of…

Molecular Networks · Quantitative Biology 2022-01-28 Santosh Manicka , Manuel Marques-Pita , Luis M. Rocha

While variable selection is essential to optimize the learning complexity by prioritizing features, automating the selection process is preferred since it requires laborious efforts with intensive analysis otherwise. However, it is not an…

Machine Learning · Computer Science 2019-10-29 Makiya Nakashima , Alex Sim , Youngsoo Kim , Jonghyun Kim , Jinoh Kim

We developed a density functional theory-free approach for crystal structure prediction via combing graph network (GN) and Bayesian optimization (BO). GN is adopted to establish the correlation model between crystal structure and formation…

Materials Science · Physics 2020-11-24 Guanjian Cheng , Xin-Gao Gong , Wan-Jian Yin

Accurately detecting crack boundaries is crucial for reliability assessment and risk management of structures and materials, such as structural health monitoring, diagnostics, prognostics, and maintenance scheduling. Uncertainty…

Computer Vision and Pattern Recognition · Computer Science 2023-06-16 Rahul Rathnakumar , Yutian Pang , Yongming Liu

Efficient and reliable beam alignment is a critical requirement for mmWave multiple-input multiple-output (MIMO) systems, especially in 6G and beyond, where communication must be fast, adaptive, and resilient to real-world uncertainties.…

Artificial Intelligence · Computer Science 2025-08-25 Nasir Khan , Asmaa Abdallah , Abdulkadir Celik , Ahmed M. Eltawil , Sinem Coleri

In the classical synthesis problem, we are given an LTL formula psi over sets of input and output signals, and we synthesize a transducer that realizes psi. One weakness of automated synthesis in practice is that it pays no attention to the…

Logic in Computer Science · Computer Science 2016-08-24 Shaull Almagor , Orna Kupferman

Selective classifiers improve model reliability by abstaining on inputs the model deems uncertain. However, few practical approaches achieve the gold-standard performance of a perfect-ordering oracle that accepts examples exactly in order…

Machine Learning · Computer Science 2025-10-27 Stephan Rabanser , Nicolas Papernot

Discriminating between correct and incorrect substrates is a core process in biology but how is energy apportioned between the conflicting demands of accuracy ($\mu$), speed ($\sigma$) and total entropy production rate ($P$)? Previous…

Molecular Networks · Quantitative Biology 2019-06-18 Felix Wong , Ariel Amir , Jeremy Gunawardena

EASAL (efficient atlasing and sampling of assembly landscapes) is a recently reported geometric method for representing, visualizing, sampling and computing integrals over the potential energy landscape tailored for small molecular…

Chemical Physics · Physics 2014-09-04 Aysegul Ozkan , Meera Sitharam

Established methods for structural elicitation typically rely on code modelling standard graphical models classes, most often Bayesian networks. However, more appropriate models may arise from asking the expert questions in common language…

Methodology · Statistics 2018-07-11 Rachel L. Wilkerson , Jim Q. Smith

We introduce a novel approach to boost the efficiency of the importance nested sampling (INS) technique for Bayesian posterior and evidence estimation using deep learning. Unlike rejection-based sampling methods such as vanilla nested…

Instrumentation and Methods for Astrophysics · Physics 2023-06-30 Johannes U. Lange

In recent years there has been a flurry of works on learning Bayesian networks from data. One of the hard problems in this area is how to effectively learn the structure of a belief network from incomplete data- that is, in the presence of…

Machine Learning · Computer Science 2013-02-01 Nir Friedman

As today's organizational computer networks are ever evolving and becoming more and more complex, finding potential vulnerabilities and conducting security audits has become a crucial element in securing these networks. The first step in…

Cryptography and Security · Computer Science 2017-10-04 Stefan Marksteiner , Harald Lernbeiß , Bernhard Jandl-Scherf

Formal control of cyber-physical systems allows for synthesis of control strategies from rich specifications such as temporal logics. However, the classes of systems that the formal approaches can be applied to is limited due to the…

Logic in Computer Science · Computer Science 2019-09-04 Irmak Saglam , Ebru Aydin Gol

In contrast to the natural capabilities of humans to learn new tasks in a sequential fashion, neural networks are known to suffer from catastrophic forgetting, where the model's performances on old tasks drop dramatically after being…

Machine Learning · Computer Science 2023-04-03 Sanghwan Kim , Lorenzo Noci , Antonio Orvieto , Thomas Hofmann

Control synthesis under constraints is at the forefront of research on autonomous systems, in part due to its broad application from low-level control to high-level planning, where computing control inputs is typically cast as a constrained…

Optimization and Control · Mathematics 2026-03-23 Panagiotis Rousseas , Haejoon Lee , Dimos V. Dimarogonas , Dimitra Panagou

Even when starting with a very poor initial guess, the iterative configuration interaction (iCI) approach can converge from above to full CI very quickly by constructing and diagonalizing a small Hamiltonian matrix at each…

Chemical Physics · Physics 2020-01-07 Ning Zhang , Wenjian Liu , Mark R. Hoffmann

Based on the framework of Conformal Prediction (CP), we study the online construction of confidence sets given a black-box machine learning model. By converting the target confidence levels into quantile levels, the problem can be reduced…

Machine Learning · Statistics 2025-05-23 Zhiyu Zhang , Zhou Lu , Heng Yang

Modern computer-assisted synthesis planning (CASP) systems show promises at generating chemically valid reaction steps but struggle to incorporate strategic considerations such as convergent assembly, protecting group minimization, and…

Artificial Intelligence · Computer Science 2025-12-02 Daniel Armstrong , Zlatko Jončev , Andres M Bran , Philippe Schwaller

Current approaches to A/B testing in networks focus on limiting interference, the concern that treatment effects can "spill over" from treatment nodes to control nodes and lead to biased causal effect estimation. Prominent methods for…

Machine Learning · Computer Science 2020-04-16 Zahra Fatemi , Elena Zheleva