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Compressed suffix arrays (CSAs) index large repetitive collections and are key in many text applications. The r-index and its derivatives combine the run-length Burrows-Wheeler Transform (BWT) with suffix array sampling to achieve space…

Data Structures and Algorithms · Computer Science 2026-02-20 Diego Díaz-Domínguez , Veli Mäkinen

As the ecosystem of Large Language Model (LLM)-based agents expands rapidly, efficient and accurate Agent Discovery becomes a critical bottleneck for large-scale multi-agent collaboration. Existing approaches typically face a dichotomy:…

Artificial Intelligence · Computer Science 2026-05-07 Jinliang Xu

Recent multimodal large language models (MLLMs) still struggle with long document understanding due to two fundamental challenges: information interference from abundant irrelevant content, and the quadratic computational cost of…

Computation and Language · Computer Science 2025-11-14 Yongxin Shi , Jiapeng Wang , Zeyu Shan , Dezhi Peng , Zening Lin , Lianwen Jin

We introduce RosettaSearch, an inference-time multi-objective optimization approach for backbone conditioned protein sequence design. We use large language models (LLMs) as a generative optimizer within a search algorithm capable of…

Unstructured documents dominate enterprise and web data, but their lack of explicit organization hinders precise information retrieval. Current mainstream retrieval methods, especially embedding-based vector search, rely on coarse-grained…

Information Retrieval · Computer Science 2026-04-06 Teng Lin , Yuyu Luo , Nan Tang

In this paper we investigate XSB-Prolog as a static analysis engine for data represented by medium-sized graphs. We use XSB-Prolog to automatically identify function dependencies in the Linux Kernel---queries that are difficult to implement…

Programming Languages · Computer Science 2013-08-20 Spyros Hadjichristodoulou , Donald E. Porter , David S. Warren

This paper presents a novel method for parsing and vectorizing semi-structured data to enhance the functionality of Retrieval-Augmented Generation (RAG) within Large Language Models (LLMs). We developed a comprehensive pipeline for…

Databases · Computer Science 2024-05-09 Hang Yang , Jing Guo , Jianchuan Qi , Jinliang Xie , Si Zhang , Siqi Yang , Nan Li , Ming Xu

Heterogeneous information networks (HIN) have gained increasing popularity in recent years for capturing complex relations between diverse types of nodes. Meta-structures are proposed as a useful tool to identify the important patterns in…

Machine Learning · Computer Science 2024-06-25 Lin Chen , Fengli Xu , Nian Li , Zhenyu Han , Meng Wang , Yong Li , Pan Hui

User queries in real-world recommendation systems often combine structured constraints (e.g., category, attributes) with unstructured preferences (e.g., product descriptions or reviews). We introduce HyST (Hybrid retrieval over…

Information Retrieval · Computer Science 2025-08-26 Jiyoon Myung , Jihyeon Park , Joohyung Han

Large language models (LLMs) commonly struggle with specialized or emerging topics which are rarely seen in the training corpus. Graph-based retrieval-augmented generation (GraphRAG) addresses this by structuring domain knowledge as a graph…

Information Retrieval · Computer Science 2025-06-05 Zhefan Wang , Huanjun Kong , Jie Ying , Wanli Ouyang , Nanqing Dong

Language models are now capable of solving tasks that require dealing with long sequences consisting of hundreds of thousands of tokens. However, they often fail on tasks that require repetitive use of simple rules, even on sequences that…

Computation and Language · Computer Science 2024-02-21 Mirelle Bueno , Roberto Lotufo , Rodrigo Nogueira

In real practice, questions are typically complex and knowledge-intensive, requiring Large Language Models (LLMs) to recognize the multifaceted nature of the question and reason across multiple information sources. Iterative and adaptive…

Computation and Language · Computer Science 2025-12-05 Boyi Zhang , Zhuo Liu , Hangfeng He

Search agents, which integrate language models (LMs) with web search, are becoming crucial for answering complex user queries. Constructing training datasets for deep research tasks, involving multi-step retrieval and reasoning, remains…

Computation and Language · Computer Science 2026-04-03 Nandan Thakur , Zijian Chen , Xueguang Ma , Jimmy Lin

Large language models (LLMs) have demonstrated broad utility across molecular domains, spanning drug discovery and materials design. Analyzing LLMs' latent representations is crucial for elucidating their underlying mechanisms, improving…

Machine Learning · Computer Science 2026-02-03 Zhuoran Li , Xu Sun , Wanyu Lin , Jiannong Cao

Reasoning-focused large language models (LLMs) are rapidly evolving across various domains, yet their capabilities in handling complex legal problems remains underexplored. In this paper, we introduce Unilaw-R1, a large language model…

Computation and Language · Computer Science 2025-12-09 Hua Cai , Shuang Zhao , Liang Zhang , Xuli Shen , Qing Xu , Weilin Shen , Zihao Wen , Tianke Ban

Applications in emerging domains such as XR are being built as compound inference systems, where multiple ML models are composed in the form of a task graph to service each request. Serving these compound systems efficiently raises two…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-03-11 Sriram Devata , Rahul Singh , Sarita Adve

Frequent pattern mining is a relevant method to analyse structured data, like sequences, trees or graphs. It consists in identifying characteristic substructures of a dataset. This paper deals with a new type of patterns for tree data:…

Data Structures and Algorithms · Computer Science 2024-01-05 Romain Azaïs , Florian Ingels

Searching code is a common task that developers perform to understand APIs, learn common code patterns, and navigate code. Currently, developers most commonly search using keywords and regular expressions that are easy to use and widely…

Software Engineering · Computer Science 2025-07-04 Ben Limpanukorn , Yanjun Wang , Zach Patterson , Pranav Garg , Murali Krishna Ramanathan , Xiaofei Ma , Anoop Deoras , Miryung Kim

Organizing large-scale resources in a multidimensional semantic space is an approach to efficiently managing and querying resources from different semantic dimensions. To support advanced applications, this paper proposes a resource space…

Databases · Computer Science 2026-05-26 Xiaoping Sun , Hai Zhuge

We present Team asdfo123's submission to the LLMSR@XLLM25 shared task, which evaluates large language models on producing fine-grained, controllable, and interpretable reasoning processes. Systems must extract all problem conditions,…

Computation and Language · Computer Science 2025-05-20 Xinye Li , Mingqi Wan , Dianbo Sui
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