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Related papers: Extracting Post-Acute Sequelae of SARS-CoV-2 Infec…

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Post-acute sequelae of SARS-CoV-2 (PASC) is an increasingly recognized yet incompletely understood public health concern. Several studies have examined various ways to phenotype PASC to better characterize this heterogeneous condition.…

Quantitative Methods · Quantitative Biology 2023-08-09 Sarah Pungitore , Toluwanimi Olorunnisola , Jarrod Mosier , Vignesh Subbian

The long-term effects of Postacute Sequelae of SARS-CoV-2, known as PASC, pose a significant challenge to healthcare systems worldwide. Accurate identification of progression events, such as hospitalization and reinfection, is essential for…

Machine Learning · Computer Science 2025-07-01 Jing Wang , Amar Sra , Jeremy C. Weiss

Moderate to severe post-acute sequelae of SARS-CoV-2 infection (PASC), also called long COVID, is estimated to impact as many as 10% of SARS-CoV-2 infected individuals, representing a chronic condition with a substantial global public…

Methodology · Statistics 2024-10-11 Harrison T. Reeder , Tanayott Thaweethai , Andrea S. Foulkes

Early prediction of Post-Acute Sequelae of SARS-CoV-2 severity is a critical challenge for women's health, particularly given the diagnostic overlap between PASC and common hormonal transitions such as menopause. Identifying and accounting…

Machine Learning · Computer Science 2026-03-19 Jing Wang , Jie Shen , Yiming Luo , Amar Sra , Qiaomin Xie , Jeremy C. Weiss

Objective: This study aims to develop an end-to-end natural language processing pipeline for triage and diagnosis of COVID-19 from patient-authored social media posts, in order to provide researchers and public health practitioners with…

Computation and Language · Computer Science 2022-01-10 Abul Hasan , Mark Levene , David Weston , Renate Fromson , Nicolas Koslover , Tamara Levene

To identify patients who are hospitalized because of COVID-19 as opposed to those who were admitted for other indications, we compared the performance of different computable phenotype definitions for COVID-19 hospitalizations that use…

Computation and Language · Computer Science 2023-02-06 Feier Chang , Jay Krishnan , Jillian H Hurst , Michael E Yarrington , Deverick J Anderson , Emily C O'Brien , Benjamin A Goldstein

Clinical notes are an essential component of a health record. This paper evaluates how natural language processing (NLP) can be used to identify the risk of acute care use (ACU) in oncology patients, once chemotherapy starts. Risk…

Computation and Language · Computer Science 2023-06-28 Claudio Fanconi , Marieke van Buchem , Tina Hernandez-Boussard

The field of clinical natural language processing has been advanced significantly since the introduction of deep learning models. The self-supervised representation learning and the transfer learning paradigm became the methods of choice in…

Computation and Language · Computer Science 2020-04-27 Andrey Kormilitzin , Nemanja Vaci , Qiang Liu , Alejo Nevado-Holgado

Postsurgical complications (PSCs) are known as a deviation from the normal postsurgical course and categorized by severity and treatment requirements. Surgical site infection (SSI) is one of major PSCs and the most common…

Information Retrieval · Computer Science 2018-12-10 Feichen Shen , David W Larson , James M. Naessens , Elizabeth B. Habermann , Hongfang Liu , Sunghwan Sohn

Post-acute sequelae of SARS-CoV-2 infection (PASC) or Long COVID is an emerging medical condition that has been observed in several patients with a positive diagnosis for COVID-19. Historical Electronic Health Records (EHR) like diagnosis…

It is shown that various symptoms could remain in the stage of post-acute sequelae of SARS-CoV-2 infection (PASC), otherwise known as Long COVID. A number of COVID patients suffer from heterogeneous symptoms, which severely impact recovery…

Quantitative Methods · Quantitative Biology 2022-11-17 Sihang Jiang , Johanna Loomba , Suchetha Sharma , Donald Brown

Identifying patient diagnoses from discharge letters is essential to enable large-scale cohort selection and epidemiological research, but traditional supervised approaches rely on extensive manual annotation, which is often impractical for…

Computation and Language · Computer Science 2026-01-01 Vittorio Torri , Elisa Barbieri , Anna Cantarutti , Carlo Giaquinto , Francesca Ieva

For infectious diseases, characterizing symptom duration is of clinical and public health importance. Symptom duration may be assessed by surveying infected individuals and querying symptom status at the time of survey response. For…

T-cells are central to SARS-CoV-2 clearance and immunological memory, yet their contribution to the persistence of post-acute sequelae of COVID-19 (PASC) remains poorly understood. The immunological features that distinguish individuals who…

Electronic health records (EHRs) store an extensive array of patient information, encompassing medical histories, diagnoses, treatments, and test outcomes. These records are crucial for enabling healthcare providers to make well-informed…

Computation and Language · Computer Science 2023-08-07 Yu-Neng Chuang , Ruixiang Tang , Xiaoqian Jiang , Xia Hu

The availability of SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) virus data post-COVID has reached exponentially to an enormous magnitude, opening research doors to analyze its behavior. Various studies are conducted by…

Neural and Evolutionary Computing · Computer Science 2025-01-28 Taslim Murad , Prakash Chourasia , Sarwan Ali , Imdad Ullah Khan , Murray Patterson

This paper describes novel models tailored for a new application, that of extracting the symptoms mentioned in clinical conversations along with their status. Lack of any publicly available corpus in this privacy-sensitive domain led us to…

Computation and Language · Computer Science 2019-06-07 Nan Du , Kai Chen , Anjuli Kannan , Linh Tran , Yuhui Chen , Izhak Shafran

With the increasing number of clinical trial reports generated every day, it is becoming hard to keep up with novel discoveries that inform evidence-based healthcare recommendations. To help automate this process and assist medical experts,…

Computation and Language · Computer Science 2023-05-03 Juraj Vladika , Florian Matthes

Objective: Natural language processing can help minimize human intervention in identifying patients meeting eligibility criteria for clinical trials, but there is still a long way to go to obtain a general and systematic approach that is…

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