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Genomic Selection (GS) uses whole-genome information to predict crop phenotypes and accelerate breeding. Traditional GS methods, however, struggle with prediction accuracy for complex traits and large datasets. We propose DPCformer, a deep…

Machine Learning · Computer Science 2025-11-11 Pengcheng Deng , Kening Liu , Mengxi Zhou , Mingxi Li , Rui Yang , Chuzhe Cao , Maojun Wang , Zeyu Zhang

In the last decade, advances in molecular dynamics (MD) and Markov State Model (MSM) methodologies have made possible accurate and efficient estimation of kinetic rates and reactive pathways for complex biomolecular dynamics occurring on…

Biomolecules · Quantitative Biology 2020-01-29 Hongbin Wan , Vincent A. Voelz

Multicriteria decision analysis (MCDA) is a widely used tool to support decisions in which a set of alternatives should be ranked or classified based on multiple criteria. Recent studies in MCDA have shown the relevance of considering not…

Machine Learning · Computer Science 2024-01-17 Betania Silva Carneiro Campello , Leonardo Tomazeli Duarte , João Marcos Travassos Romano

An emerging optimisation problem from the real-world applications, named the multi-point dynamic aggregation (MPDA) problem, has become one of the active research topics of the multi-robot system. This paper focuses on a multi-objective…

Neural and Evolutionary Computing · Computer Science 2021-05-12 Guanqiang Gao , Bin Xin , Yi Mei , Shuxin Ding , Juan Li

Recent advancements in the Mamba architecture, with its linear computational complexity, being a promising alternative to transformer architectures suffering from quadratic complexity. While existing works primarily focus on adapting Mamba…

Computer Vision and Pattern Recognition · Computer Science 2025-03-12 Jie Hu , Junwei Zheng , Jiale Wei , Jiaming Zhang , Rainer Stiefelhagen

The discretization of continuous numerical attributes remains a persistent computational bottleneck in the induction of decision trees, particularly as dataset dimensions scale. Building upon the recently proposed MSD-Splitting technique --…

Machine Learning · Computer Science 2026-04-22 Jake Lee

Recent decades have witnessed great advancements in multiobjective evolutionary algorithms (MOEAs) for multiobjective optimization problems (MOPs). However, these progressively improved MOEAs have not necessarily been equipped with scalable…

Neural and Evolutionary Computing · Computer Science 2023-02-28 Songbai Liu , Qiuzhen Lin , Jianqiang Li , Kay Chen Tan

Real-world and complex problems have usually many objective functions that have to be optimized all at once. Over the last decades, Multi-Objective Evolutionary Algorithms (MOEAs) are designed to solve this kind of problems. Nevertheless,…

Neural and Evolutionary Computing · Computer Science 2020-02-21 Cristian Ramirez-Atencia , Sanaz Mostaghim , David Camacho

The software program BAMM has been widely used to study the dynamics of speciation, extinction, and phenotypic evolution on phylogenetic trees. The program implements a model-based clustering algorithm to identify clades that share common…

Quantitative Methods · Quantitative Biology 2017-11-10 Daniel L Rabosky

Multi-objective evolutionary algorithms (MOEAs) are essential for solving complex optimization problems, such as the diet problem, where balancing conflicting objectives, like cost and nutritional content, is crucial. However, most MOEAs…

Neural and Evolutionary Computing · Computer Science 2026-01-05 Gustavo V. Nascimento , Ivan R. Meneghini , Valéria Santos , Eduardo Luz , Gladston Moreira

Sliding-window attention offers a hardware-efficient solution to the memory and throughput challenges of Large Language Models (LLMs) in long-context scenarios. Existing methods typically employ a single window length across all attention…

In recent years, researchers pay growing attention to the few-shot learning (FSL) task to address the data-scarce problem. A standard FSL framework is composed of two components: i) Pre-train. Employ the base data to generate a CNN-based…

Computer Vision and Pattern Recognition · Computer Science 2021-12-06 Shuai Shao , Lei Xing , Rui Xu , Weifeng Liu , Yan-Jiang Wang , Bao-Di Liu

The Adaptive Data Analysis (ADA) problem, where an analyst interacts with a dataset through statistical queries, is often studied under the assumption of adversarial analyst behavior. To decrease this gap, we propose a revised model of ADA…

Methodology · Statistics 2025-01-22 Amir Hossein Hadavi , Mohammad M. Mojahedian , Mohammad Reza Aref

To deal with various datasets over different complexity, this paper presents an self-adaptive learning model that combines the proposed Dynamic Connected Neural Decision Networks (DNDN) and a new pruning method--Dynamic Soft Pruning (DSP).…

Machine Learning · Computer Science 2021-02-23 Xinyu Fan

Understanding how the time-complexity of evolutionary algorithms (EAs) depend on their parameter settings and characteristics of fitness landscapes is a fundamental problem in evolutionary computation. Most rigorous results were derived…

Neural and Evolutionary Computing · Computer Science 2016-10-28 Dogan Corus , Duc-Cuong Dang , Anton V. Eremeev , Per Kristian Lehre

Global expression analyses using microarray technologies are becoming more common in genomic research, therefore, new statistical challenges associated with combining information from multiple studies must be addressed. In this paper we…

Applications · Statistics 2013-01-29 Jia Li , George C. Tseng

Most state-of-the-art object detection systems follow an anchor-based diagram. Anchor boxes are densely proposed over the images and the network is trained to predict the boxes position offset as well as the classification confidence.…

Computer Vision and Pattern Recognition · Computer Science 2020-07-21 Wenshuo Ma , Tingzhong Tian , Hang Xu , Yimin Huang , Zhenguo Li

We present a new discriminative technique for the multiple-source adaptation, MSA, problem. Unlike previous work, which relies on density estimation for each source domain, our solution only requires conditional probabilities that can…

Machine Learning · Computer Science 2021-02-15 Corinna Cortes , Mehryar Mohri , Ananda Theertha Suresh , Ningshan Zhang

Pretrained equivariant graph neural networks based on spherical harmonics offer efficient and accurate alternatives to computationally expensive ab-initio methods, yet adapting them to new tasks and chemical environments still requires…

Machine Learning · Computer Science 2025-12-12 Dian Jin , Yancheng Yuan , Xiaoming Tao

Genome-wide association studies (GWAS) have identified thousands of genetic variants associated with human traits or diseases in the past decade. Nevertheless, much of the heritability of many traits is still unaccounted for. Commonly used…

Methodology · Statistics 2022-04-22 Qiaolan Deng , Chi Song , Shili Lin
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