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Neural populations exhibit complex recurrent structures that drive behavior, while continuously receiving and integrating external inputs from sensory stimuli, upstream regions, and neurostimulation. However, neural populations are often…

Neurons and Cognition · Quantitative Biology 2025-09-24 Parsa Vahidi , Omid G. Sani , Maryam M. Shanechi

Can artificial intelligence unlock the secrets of the human brain? How do the inner mechanisms of deep learning models relate to our neural circuits? Is it possible to enhance AI by tapping into the power of brain recordings? These…

Neurons and Cognition · Quantitative Biology 2024-12-31 Subba Reddy Oota , Zijiao Chen , Manish Gupta , Raju S. Bapi , Gael Jobard , Frederic Alexandre , Xavier Hinaut

A core challenge in the interpretation of deep neural networks is identifying commonalities between the underlying algorithms implemented by distinct networks trained for the same task. Motivated by this problem, we introduce DYNAMO, an…

Machine Learning · Computer Science 2023-03-01 Jordan Cotler , Kai Sheng Tai , Felipe Hernández , Blake Elias , David Sussillo

Annotating the right data for training deep neural networks is an important challenge. Active learning using uncertainty estimates from Bayesian Neural Networks (BNNs) could provide an effective solution to this. Despite being theoretically…

Computer Vision and Pattern Recognition · Computer Science 2019-02-22 Kashyap Chitta , Jose M. Alvarez , Adam Lesnikowski

Brain connectivity analysis is crucial for understanding brain structure and neurological function, shedding light on the mechanisms of mental illness. To study the association between individual brain connectivity networks and the clinical…

Learning time-dependent partial differential equations (PDEs) that govern evolutionary observations is one of the core challenges for data-driven inference in many fields. In this work, we propose to capture the essential dynamics of…

Numerical Analysis · Mathematics 2021-09-07 Ricardo A. Delgadillo , Jingwei Hu , Haizhao Yang

Deep neural networks (DNNs) have achieved unprecedented performance on a wide range of complex tasks, rapidly outpacing our understanding of the nature of their solutions. This has caused a recent surge of interest in methods for rendering…

Machine Learning · Statistics 2017-06-30 Samuel Ritter , David G. T. Barrett , Adam Santoro , Matt M. Botvinick

Manifold-learning techniques are routinely used in mining complex spatiotemporal data to extract useful, parsimonious data representations/parametrizations; these are, in turn, useful in nonlinear model identification tasks. We focus here…

Understanding how the brain responds to sensory inputs is challenging: brain recordings are partial, noisy, and high dimensional; they vary across sessions and subjects and they capture highly nonlinear dynamics. These challenges have led…

Neurons and Cognition · Quantitative Biology 2022-10-03 Omar Chehab , Alexandre Defossez , Jean-Christophe Loiseau , Alexandre Gramfort , Jean-Remi King

Recent research has seen many behavioral comparisons between humans and deep neural networks (DNNs) in the domain of image classification. Often, comparison studies focus on the end-result of the learning process by measuring and comparing…

Computer Vision and Pattern Recognition · Computer Science 2024-07-15 Lukas S. Huber , Fred W. Mast , Felix A. Wichmann

Self-supervised learning techniques are celebrating immense success in natural language processing (NLP) by enabling models to learn from broad language data at unprecedented scales. Here, we aim to leverage the success of these techniques…

Neurons and Cognition · Quantitative Biology 2023-01-18 Armin W. Thomas , Christopher Ré , Russell A. Poldrack

Brain network analysis is vital for understanding the neural interactions regarding brain structures and functions, and identifying potential biomarkers for clinical phenotypes. However, widely used brain signals such as Blood Oxygen Level…

Machine Learning · Computer Science 2024-05-02 Kaiqiao Han , Yi Yang , Zijie Huang , Xuan Kan , Yang Yang , Ying Guo , Lifang He , Liang Zhan , Yizhou Sun , Wei Wang , Carl Yang

Understanding the evolution of brain functional networks over time is of great significance for the analysis of cognitive mechanisms and the diagnosis of neurological diseases. Existing methods often have difficulty in capturing the…

Machine Learning · Computer Science 2025-10-30 Tianqi Guo , Liping Chen , Ciyuan Peng , Jingjing Zhou , Jing Ren

In this paper, we present an unsupervised learning approach for analyzing facial behavior based on a deep generative model combined with a convolutional neural network (CNN). We jointly train a variational auto-encoder (VAE) and a…

Computer Vision and Pattern Recognition · Computer Science 2018-05-14 Suman Saha , Rajitha Navarathna , Leonhard Helminger , Romann Weber

Brainwave signals are read through Electroencephalogram (EEG) devices. These signals are generated from an active brain based on brain activities and thoughts. The classification of brainwave signals is a challenging task due to its…

Signal Processing · Electrical Eng. & Systems 2020-02-18 Zhyar Rzgar K. Rostam , Sozan Abdullah Mahmood

System identification has greatly benefited from deep learning techniques, particularly for modeling complex, nonlinear dynamical systems with partially unknown physics where traditional approaches may not be feasible. However, deep…

Machine Learning · Computer Science 2025-04-17 Marco Forgione , Ankush Chakrabarty , Dario Piga , Matteo Rufolo , Alberto Bemporad

The robotic systems continuously interact with complex dynamical systems in the physical world. Reliable predictions of spatiotemporal evolution of these dynamical systems, with limited knowledge of system dynamics, are crucial for…

Artificial Intelligence · Computer Science 2019-01-08 Yun Long , Xueyuan She , Saibal Mukhopadhyay

Brains learn to represent information from a large set of stimuli, typically by weak supervision. Unsupervised learning is therefore a natural approach for exploring the design of biological neural networks and their computations.…

Neurons and Cognition · Quantitative Biology 2025-10-17 Roy Urbach , Elad Schneidman

Interpretation and diagnosis of machine learning models have gained renewed interest in recent years with breakthroughs in new approaches. We present Manifold, a framework that utilizes visual analysis techniques to support interpretation,…

Machine Learning · Computer Science 2019-01-18 Jiawei Zhang , Yang Wang , Piero Molino , Lezhi Li , David S. Ebert

Learning shared structure across environments facilitates rapid learning and adaptive behavior in neural systems. This has been widely demonstrated and applied in machine learning to train models that are capable of generalizing to novel…

Machine Learning · Statistics 2025-04-09 Ayesha Vermani , Josue Nassar , Hyungju Jeon , Matthew Dowling , Il Memming Park