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The structure of polymer networks, defined by chain lengths and connectivity patterns, fundamentally influences their bulk properties. While existing polymer network models connect chain properties to emergent network behavior, they are…

Soft Condensed Matter · Physics 2026-03-17 Jason Mulderrig , Michael Buche , Matthew Grasinger

New and upgraded radio interferometers produce data at massive rates and will require significant improvements in analysis techniques to reach their promised levels of performance in a routine manner. Until these techniques are fully…

Instrumentation and Methods for Astrophysics · Physics 2012-06-29 Peter K. G. Williams , Casey J. Law , Geoffrey C. Bower

The Kieker observability framework is a tool that provides users with the means to design a custom observability pipeline for their application. Originally tailored for Java, supporting Python with Kieker is worthwhile. Python's popularity…

Software Engineering · Computer Science 2025-08-06 Daphné Larrivain , Shinhyung Yang , Wilhelm Hasselbring

Large Language Models (LLMs) are increasingly being explored for their potential in software engineering, particularly in static analysis tasks. In this study, we investigate the potential of current LLMs to enhance call-graph analysis and…

Software Engineering · Computer Science 2025-07-17 Ashwin Prasad Shivarpatna Venkatesh , Rose Sunil , Samkutty Sabu , Amir M. Mir , Sofia Reis , Eric Bodden

E-graphs have emerged as a versatile data structure with applications in synthesis, optimization, and verification through techniques such as equality saturation. This paper introduces Python bindings for the experimental egglog library…

Programming Languages · Computer Science 2024-04-08 Saul Shanabrook

Due to the complex specifications of current electronic systems, design decisions need to be explored automatically. However, the exploration process is a complex task given the plethora of design choices such as the selection of…

Hardware Architecture · Computer Science 2023-06-22 Sergio Vinagrero Gutiérrez , Giorgio Di Natale , Elena-Ioana Vatajelu

Summary: The DynaSig-ML (Dynamical Signatures - Machine Learning) Python package allows the efficient, user-friendly exploration of 3D dynamics-function relationships in biomolecules, using datasets of experimental measures from large…

Biomolecules · Quantitative Biology 2022-07-08 Olivier Mailhot , Francois Major , Rafael Najmanovich

PyUnfold is a Python package for incorporating imperfections of the measurement process into a data analysis pipeline. In an ideal world, we would have access to the perfect detector: an apparatus that makes no error in measuring a desired…

Data Analysis, Statistics and Probability · Physics 2018-06-12 James Bourbeau , Zigfried Hampel-Arias

Creating and maintaining computer readable geometries for use in Monte Carlo Radiation Transport (MCRT) simulations is an error-prone and time-consuming task. Simulating a system often requires geometry from different sources and modelling…

Computational Physics · Physics 2022-01-27 Stewart Boogert , Andrey Abramov , Laurence Nevay , William Shields , Stuart Walker

In the last decade, developments in tropical geometry have provided a number of uses directly applicable to problems in statistical learning. The TML package is the first R package which contains a comprehensive set of tools and methods…

Machine Learning · Statistics 2024-12-18 David Barnhill , Ruriko Yoshida , Georgios Aliatimis , Keiji Miura

This contribution examines the capabilities of the Python ecosystem to solve nonlinear energy minimization problems, with a particular focus on transitioning from traditional MATLAB methods to Python's advanced computational tools, such as…

Mathematical Software · Computer Science 2024-07-09 Michal Béreš , Jan Valdman

Running complex sets of machine learning experiments is challenging and time-consuming due to the lack of a unified framework. This leaves researchers forced to spend time implementing necessary features such as parallelization, caching,…

Machine Learning · Computer Science 2023-11-22 Zac Pullar-Strecker , Xinglong Chang , Liam Brydon , Ioannis Ziogas , Katharina Dost , Jörg Wicker

The dirichletprocess package provides software for creating flexible Dirichlet process objects. Users can perform nonparametric Bayesian analysis using Dirichlet processes without the need to program their own inference algorithms. Instead,…

Computation · Statistics 2026-05-05 Gordon J. Ross , Dean Markwick , Priyanshu Tiwari

A hierarchical (triple scale) simulation methodology is presented for the prediction of the dynamical and rheological properties of high molecular weight entangled polymer melts. The methodology consists of atomistic, moderately…

In recent years, numerical simulations have become indispensable for addressing complex astrophysical problems. The MagnetoHydroDynamics (MHD) framework represents a key tool for investigating the dynamical evolution of astrophysical…

Instrumentation and Methods for Astrophysics · Physics 2025-09-18 Giancarlo Mattia , Daniele Crocco , David Melon Fuksman , Matteo Bugli , Vittoria Berta , Eleonora Puzzoni , Andrea Mignone , Bhargav Vaidya

BrainLesion Suite is a versatile toolkit for building modular brain lesion image analysis pipelines in Python. Following Pythonic principles, BrainLesion Suite is designed to provide a 'brainless' development experience, minimizing…

We present Monte Carlo Physarum Machine: a computational model suitable for reconstructing continuous transport networks from sparse 2D and 3D data. MCPM is a probabilistic generalization of Jones's 2010 agent-based model for simulating the…

Cosmology and Nongalactic Astrophysics · Physics 2022-04-05 Oskar Elek , Joseph N. Burchett , J. Xavier Prochaska , Angus G. Forbes

Tree-based demappers for multiple-input multiple-output (MIMO) detection such as the sphere decoder can achieve near-optimal performance but incur high computational cost due to their sequential nature. In this paper, we propose the…

Information Theory · Computer Science 2022-09-12 Daniel E. Worrall , Markus Peschl , Arash Behboodi , Roberto Bondesan

pyGDM is a python toolkit for electro-dynamical simulations of individual nano-structures, based on the Green Dyadic Method (GDM). pyGDM uses the concept of a generalized propagator, which allows to solve cost-efficiently monochromatic…

This paper introduces Sparklen, a statistical learning toolkit for Hawkes processes in Python, designed to bring together efficiency and ease of use. The purpose of this package is to provide the Python community with a complete suite of…

Methodology · Statistics 2025-03-31 Romain Edmond Lacoste