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Ecosystems are governed by dynamic processes such as competition for resources, reproduction and dispersal. These shape their biodiversity and how the system responds to change. Current approaches to modelling ecosystems, especially plants,…

Quantitative Methods · Quantitative Biology 2023-03-15 Claire L. Harris , Neil Brummitt , Christina A. Cobbold , Richard Reeve

In recent years, the explosion of malware and extensive code reuse have formed complex evolutionary connections among malware specimens. The rapid pace of development makes it challenging for existing studies to characterize recent…

Cryptography and Security · Computer Science 2025-12-02 Bojing Li , Duo Zhong , Dharani Nadendla , Gabriel Terceros , Prajna Bhandar , Raguvir S , Charles Nicholas

Given an extensive, semi-infinite collection of multivariate coevolving data sequences (e.g., sensor/web activity streams) whose observations influence each other, how can we discover the time-changing cause-and-effect relationships in…

Machine Learning · Computer Science 2026-02-19 Naoki Chihara , Yasuko Matsubara , Ren Fujiwara , Yasushi Sakurai

The issue tracking system (ITS) is a rich data source for data-driven decision-making. Different characteristics of bugs, such as severity, priority, and time to fix, provide a clear picture of an ITS. Nevertheless, such information may be…

Software Engineering · Computer Science 2022-03-23 Hadi Jahanshahi , Mucahit Cevik , José Navas-Sú , Ayşe Başar , Antonio González-Torres

This paper introduces the Java Software Evolution Tracker, a visualization and analysis tool that provides practitioners the means to examine the evolution of a software system from a top to bottom perspective, starting with changes in the…

Software Engineering · Computer Science 2017-02-24 Arthur-Jozsef Molnar

Analyzing the dynamical properties of mobile objects requires to extract trajectories from recordings, which is often done by tracking movies. We compiled a database of two-dimensional movies for very different biological and physical…

Quantitative Methods · Quantitative Biology 2021-06-09 Benjamin Gallois , Raphaël Candelier

Leadership computing facilities around the world support cutting-edge scientific research across a broad spectrum of disciplines including understanding climate change, combating opioid addiction, or simulating the decay of a neutron. While…

High Energy Physics - Lattice · Physics 2020-04-16 Chia Cheng Chang , Christopher Körber , André Walker-Loud

Evolving software is challenging, even more when it exists in many different variants. Such software evolves not only in time, but also in space--another dimension of complexity. While evolution in space is supported by a variety of…

Software Engineering · Computer Science 2021-12-03 Christoph Derks , Daniel Strüber , Thorsten Berger

Software repositories provide a detailed record of software evolution by capturing developer interactions through code-related activities such as pull requests and modifications. To better understand the underlying dynamics of codebase…

Software Engineering · Computer Science 2026-04-15 Yulong He , Nikita Verbin , Sergey Kovalchuk

The Statistical Toolkit is an open source system specialized in the statistical comparison of distributions. It addresses requirements common to different experimental domains, such as simulation validation (e.g. comparison of experimental…

Computational Physics · Physics 2015-06-11 M Batic , A. M. Paganoni , A. Pfeiffer , M. G. Pia , A. Ribon

Tracking the evolution of smart contracts is challenging due to their immutable nature and complex upgrade mechanisms. We introduce EvoChain, a comprehensive framework and dataset designed to track and visualize smart contract evolution.…

Software Engineering · Computer Science 2025-04-04 Ilham Qasse , Mohammad Hamdaqa , Björn Þór Jónsson

Despite the popularity of information measures in analysis of probabilistic systems, proper tools for their visualization are not common. This work develops a simple matrix representation of information transfer in sequential systems,…

Information Theory · Computer Science 2024-05-28 Dor Tsur , Haim Permuter

Configurable systems are those that can be adapted from a set of options. They are prevalent and testing them is important and challenging. Existing approaches for testing configurable systems are either unsound (i.e., they can miss…

Software Engineering · Computer Science 2017-02-14 Sabrina Souto , Marcelo d'Amorim

The combination of the infrastructure provided by the Internet of Things (IoT) with numerous processing nodes present at the Edge Computing (EC) ecosystem opens up new pathways to support intelligent applications. Such applications can be…

Machine Learning · Computer Science 2021-07-23 Kostas Kolomvatsos , Christos Anagnostopoulos

TOPCAT is a widely used desktop application for manipulation of astronomical catalogues and other tables, which has long provided fast interactive visualisation features including 1, 2 and 3-d plots, multiple datasets, linked views, color…

Instrumentation and Methods for Astrophysics · Physics 2014-10-27 Mark Taylor

The size of a software artifact influences the software quality and impacts the development process. In industry, when software size exceeds certain thresholds, memory errors accumulate and development tools might not be able to cope…

Software Engineering · Computer Science 2017-08-10 Jan Schroeder , Christian Berger , Alessia Knauss , Harri Preenja , Mohammad Ali , Miroslaw Staron , Thomas Herpel

Egocentric scenes exhibit frequent occlusions, varied viewpoints, and dynamic interactions compared to typical scene understanding tasks. Occlusions and varied viewpoints can lead to multi-view semantic inconsistencies, while dynamic…

Computer Vision and Pattern Recognition · Computer Science 2025-03-17 Di Li , Jie Feng , Jiahao Chen , Weisheng Dong , Guanbin Li , Guangming Shi , Licheng Jiao

Open source software (OSS) is essential for modern society and, while substantial research has been done on individual (typically central) projects, only a limited understanding of the periphery of the entire OSS ecosystem exists. For…

Software Engineering · Computer Science 2020-11-02 Yuxing Ma , Tapajit Dey , Chris Bogart , Sadika Amreen , Marat Valiev , Adam Tutko , David Kennard , Russell Zaretzki , Audris Mockus

More and more distributed software systems are being developed and deployed today. Like other software, distributed software systems also need very strong quality assurance support. Distributed software is often very large/complex, has…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-03-08 Xiaoqin Fu

How to effectively exploit spatio-temporal information is crucial to capture target appearance changes in visual tracking. However, most deep learning-based trackers mainly focus on designing a complicated appearance model or template…

Computer Vision and Pattern Recognition · Computer Science 2024-01-09 Liangtao Shi , Bineng Zhong , Qihua Liang , Ning Li , Shengping Zhang , Xianxian Li