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Dispersal is essential to the plethora of motile microorganisms living in porous environments, yet how it relates to movement patterns and pore space structure remains largely unknown. Here we investigate numerically the long-time dispersal…

Soft Condensed Matter · Physics 2025-03-06 T. Pietrangeli , R. Foffi , R. Stocker , C. Ybert , C. Cottin-Bizonne , F. Detcheverry

Metabolic substrates, such as oxygen and glucose, are rapidly delivered to the cell through filtration across microvessels walls. Modelling this important process is complicated by the coupling between flow and transport equations, which…

Subcellular Processes · Quantitative Biology 2013-08-12 Laura Facchini , Alberto Bellin , Eleuterio F. Toro

Swimming cells and microorganisms must often move though complex fluids that contain an immersed microstructure such as polymer molecules, or filaments. In many important biological processes, such as mammalian reproduction and bacterial…

Fluid Dynamics · Physics 2018-08-06 Arshad Kamal , Eric E Keaveny

Modulating ion transport through nanoporous membranes is critical to many important chemical and biological separation processes. The corresponding transport timescales, however, are often too long to capture accurately using conventional…

Statistical Mechanics · Physics 2022-12-23 Brian A Shoemaker , Tiago S Domingues , Amir Haji-Akbari

Time-evolving perforated domains arise in many engineering and geoscientific applications, including reactive transport, particle deposition, and structural degradation in porous media. Accurately capturing the macroscopic behavior of such…

Numerical Analysis · Mathematics 2025-06-27 Wei Xie , Viet Ha Hoang , Yin Yang , Yunqing Huang

Active transport of biomolecules assisted by motor proteins is imperative for the proper functioning of cellular activities. Inspired by the diffusion of active agents in crowded cellular channels, we computationally investigate the…

Soft Condensed Matter · Physics 2022-01-19 Rajiblochan Sahoo , Ligesh Theeyancheri , Rajarshi Chakrabarti

Complex or hostile environments can sometimes inhibit the movement capabilities of diffusive particles or active swimmers, who may thus become stuck in fixed positions. This occurs, for example, in the adhesion of bacteria to surfaces at…

Statistical Mechanics · Physics 2024-01-12 Luca Angelani

Diffusion of particles through an heterogenous obstacle line is modeled as a two-dimensional diffusion problem with a one--directional nonlinear convective drift and is examined using two-scale asymptotic analysis. At the scale where the…

Analysis of PDEs · Mathematics 2018-04-24 Emilio N. M. Cirillo , Ida de Bonis , Adrian Muntean , Omar Richardson

In biological systems, molecular-scale forces and motions are pivotal for enabling processes like motility, shape change, and replication. These forces and motions are organized, amplified, and transmitted across macroscopic scales by…

When two binary solutions are separated by a permeable barrier, the individual species typically diffuse and mix, dissipating their chemical potential gradients. However, we use model lattice simulations to show that single-file…

Statistical Mechanics · Physics 2009-10-31 Tom Chou , Detlef Lohse

We consider a one-dimensional Brownian motion with diffusion coefficient $D$ in the presence of $n$ partially absorbing traps with intensity $\beta$, separated by a distance $L$ and evenly spaced around the initial position of the particle.…

Statistical Mechanics · Physics 2022-11-28 Gaia Pozzoli , Benjamin De Bruyne

We experimentally, numerically and analytically explore the diffusive transport of active colloidal particles with sensory delay, navigating motility landscapes in which the self-propulsion speed depends on space. We show how the transport…

Statistical Mechanics · Physics 2026-04-29 Adrià Garcés , Ueli Töpfer , Lucio Isa , Demian Levis , Ignacio Pagonabarraga

The displacement of multiphase fluid flow in a pore doublet is a fundamental problem, and is also of importance in understanding of the transport mechanisms of multiphase flows in the porous media. During the displacement of immiscible…

Fluid Dynamics · Physics 2023-06-14 Fang Shan , Zhenhua Chai , Baochang Shi , Meng Zhao

Optimized transmission conditions in domain decomposition methods have been the focus of intensive research efforts over the past decade. Traditionally, transmission conditions are optimized for two subdomain model configurations, and then…

Numerical Analysis · Mathematics 2022-04-22 Victorita Dolean , Martin J. Gander , Alexandros Kyriakis

The behavior of fluid interfaces far from equilibrium plays central roles in nature and in industry. Active swimmers trapped at interfaces can alter transport at fluid boundaries with far reaching implications. Swimmers can become trapped…

Soft Condensed Matter · Physics 2024-02-08 Jiayi Deng , Mehdi Molaei , Nicholas G. Chisholm , Kathleen J. Stebe

We study the dynamics of micron-sized particles on a layer of motile cells. This cell carpet acts as an active bath that propels passive tracer particles via direct mechanical contact. The resulting nonequilibrium transport shows a…

Soft Condensed Matter · Physics 2024-02-27 Robert Großmann , Lara S. Bort , Ted Moldenhawer , Setareh Sharifi Panah , Ralf Metzler , Carsten Beta

A way forward for high throughput fabrication of microcapsules with uniform size and mechanical properties was reported irrespective of the kinetic process of shell assembly. Microcapsules were produced using lab-scale emulsification…

Soft Condensed Matter · Physics 2021-02-12 Mehdi Maleki , Clément de Loubens , Kaili Xie , Emeline Talansier , Hugues Bodiguel , Marc Leonetti

Direct numerical simulations are used to elucidate the interplay of wettability and fluid viscosities on immiscible fluid displacements in a heterogeneous porous medium.We classify the flow regimes based using qualitative and quantitative…

Numerical modeling of proton exchange membrane fuel cells is at the verge of becoming predictive. A crucial requisite for this, though, is that material properties of the membrane-electrode assembly and their functional dependence on the…

Applied Physics · Physics 2019-10-03 Roman Vetter , Jürgen O. Schumacher

Run-and-tumble is a common but vital strategy that bacteria employ to explore environment suffused with boundaries, as well as to escape from entrapment. In this study we reveal how this strategy and the resulting dynamical behavior can be…

Soft Condensed Matter · Physics 2025-01-30 Premkumar Leishangthem , Xuan Wang , Junan Chen , Shengqi Yang , Xinliang Xu