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This paper focuses on the detection of Parkinson's disease based on the analysis of a patient's gait. The growing popularity and success of Transformer networks in natural language processing and image recognition motivated us to develop a…

Machine Learning · Computer Science 2022-04-04 Duc Minh Dimitri Nguyen , Mehdi Miah , Guillaume-Alexandre Bilodeau , Wassim Bouachir

Foundation models for time series are emerging as powerful general-purpose backbones, yet their potential for domain-specific biomedical signals such as electroencephalography (EEG) remains rather unexplored. In this work, we investigate…

Machine Learning · Computer Science 2025-11-03 Théo Gnassounou , Yessin Moakher , Shifeng Xie , Vasilii Feofanov , Ievgen Redko

We present InceptoFormer, a multi-signal neural framework designed for Parkinson's Disease (PD) severity evaluation via gait dynamics analysis. Our architecture introduces a 1D adaptation of the Inception model, which we refer to as…

Computer Vision and Pattern Recognition · Computer Science 2025-08-07 Safwen Naimi , Arij Said , Wassim Bouachir , Guillaume-Alexandre Bilodeau

Emotional states, as indicators of affect, are pivotal to overall health, making their accurate prediction before onset crucial. Current studies are primarily centered on immediate short-term affect detection using data from wearable and…

This study investigates continual fine-tuning strategies for deep learning in online longitudinal electroencephalography (EEG) motor imagery (MI) decoding within a causal setting involving a large user group and multiple sessions per…

Machine Learning · Computer Science 2025-02-12 Martin Wimpff , Bruno Aristimunha , Sylvain Chevallier , Bin Yang

Neurons can display highly variable dynamics. While such variability presumably supports the wide range of behaviors generated by the organism, their gene expressions are relatively stable in the adult brain. This suggests that neuronal…

Neurons and Cognition · Quantitative Biology 2023-11-07 Lu Mi , Trung Le , Tianxing He , Eli Shlizerman , Uygar Sümbül

Accurate finger force estimation is critical for next-generation human-machine interfaces. Traditional electromyography (EMG)-based decoding methods using deep learning require large datasets and high computational resources, limiting their…

Neural and Evolutionary Computing · Computer Science 2025-08-01 Farah Baracat , Giacomo Indiveri , Elisa Donati

Inter-individual variability in fine-grained functional brain organization poses challenges for scalable data analysis and modeling. Functional alignment techniques can help mitigate these individual differences but typically require paired…

Neurons and Cognition · Quantitative Biology 2024-08-02 Haibao Wang , Jun Kai Ho , Fan L. Cheng , Shuntaro C. Aoki , Yusuke Muraki , Misato Tanaka , Yukiyasu Kamitani

Transformer models have become state-of-the-art in decoding stimuli and behavior from neural activity, significantly advancing neuroscience research. Yet greater transparency in their decision-making processes would substantially enhance…

Quantitative Methods · Quantitative Biology 2025-06-18 Laurence Freeman , Philip Shamash , Vinam Arora , Caswell Barry , Tiago Branco , Eva Dyer

Many models are pretrained on redacted text for privacy reasons. Clinical foundation models are often trained on de-identified text, which uses special syntax (masked) text in place of protected health information. Even though these models…

Computation and Language · Computer Science 2025-06-18 Paul Landes , Aaron J Chaise , Tarak Nath Nandi , Ravi K Madduri

The development of robust and generalisable models for encoding the spatio-temporal dynamics of human brain activity is crucial for advancing neuroscientific discoveries. However, significant individual variation in the organisation of the…

Image and Video Processing · Electrical Eng. & Systems 2024-06-12 Simon Dahan , Logan Z. J. Williams , Yourong Guo , Daniel Rueckert , Emma C. Robinson

Data-driven methods have become increasingly more prominent for musculoskeletal modelling due to their conceptually intuitive simple and fast implementation. However, the performance of a pre-trained data-driven model using the data from…

Signal Processing · Electrical Eng. & Systems 2022-11-23 Jie Zhang , Yihui Zhao , Tianzhe Bao , Zhenhong Li , Kun Qian , Alejandro F. Frangi , Sheng Quan Xie , Zhi-Qiang Zhang

Automated analysis of electroencephalography (EEG) has recently undergone a paradigm shift. The introduction of transformer architectures and self-supervised pretraining (SSL) has led to the development of EEG foundation models. These…

Neurons and Cognition · Quantitative Biology 2026-02-04 Hannah Portmann , Yosuke Morishima

Preoperative improvement rate prediction for Parkinson's disease surgery is clinically important yet difficult because imaging signals are subtle and patients are heterogeneous. We address this setting, where only information available…

Computer Vision and Pattern Recognition · Computer Science 2026-03-03 Yand Wang , Chen Zhang , Lanyun Zhu , Yixin Chen , Qunbo Wang , Yutong Bai , Jurgen Germann , Yinghong Wen , Shuai Shao

Machine learning (ML) applied to routine patient monitoring within intensive care units (ICUs) has the potential to improve care by providing clinicians with novel insights into each patient's health and expected response to interventions.…

Signal Processing · Electrical Eng. & Systems 2024-06-26 Thomas Kite , Uzair Tahamid Siam , Brian Ayers , Nicholas Houstis , Aaron D Aguirre

Decoding brain imaging data are gaining popularity, with applications in brain-computer interfaces and the study of neural representations. Decoding is typicallysubject-specific and does not generalise well over subjects, due to high…

Machine Learning · Computer Science 2024-01-22 Richard Csaky , Mats Van Es , Oiwi Parker Jones , Mark Woolrich

Advances in neuroscience and artificial intelligence have enabled preliminary decoding of brain activity. However, despite the progress, the interpretability of neural representations remains limited. A significant challenge arises from the…

Computer Vision and Pattern Recognition · Computer Science 2025-12-23 Hasib Aslam , Muhammad Talal Faiz , Muhammad Imran Malik

Decoding EEG signals is crucial for unraveling human brain and advancing brain-computer interfaces. Traditional machine learning algorithms have been hindered by the high noise levels and inherent inter-person variations in EEG signals.…

Signal Processing · Electrical Eng. & Systems 2024-03-26 Pengfei Sun , Jorg De Winne , Paul Devos , Dick Botteldooren

We empirically demonstrate that a transformer pre-trained on country-scale unlabeled human mobility data learns embeddings capable, through fine-tuning, of developing a deep understanding of the target geography and its corresponding…

Computers and Society · Computer Science 2024-12-13 Alameen Najjar

We empirically investigate how pre-training on data of different modalities, such as language and vision, affects fine-tuning of Transformer-based models to Mujoco offline reinforcement learning tasks. Analysis of the internal…

Machine Learning · Computer Science 2022-11-21 Shiro Takagi