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Data consisting of a graph with a function mapping into $\mathbb{R}^d$ arise in many data applications, encompassing structures such as Reeb graphs, geometric graphs, and knot embeddings. As such, the ability to compare and cluster such…

Computational Geometry · Computer Science 2025-07-17 Erin W. Chambers , Elizabeth Munch , Sarah Percival , Bei Wang

Proximity measures on graphs have a variety of applications in network analysis, including community detection. Previously they have been mainly studied in the context of networks without attributes. If node attributes are taken into…

Social and Information Networks · Computer Science 2022-12-06 Rinat Aynulin , Pavel Chebotarev

Recent genomic and bioinformatic advances have motivated the development of numerous random network models purporting to describe graphs of biological, technological, and sociological origin. The success of a model has been evaluated by how…

Molecular Networks · Quantitative Biology 2007-05-23 Manuel Middendorf , Etay Ziv , Carter Adams , Jen Hom , Robin Koytcheff , Chaya Levovitz , Gregory Woods , Linda Chen , Chris Wiggins

In the past, the dichotomy between homophily and heterophily has inspired research contributions toward a better understanding of Deep Graph Networks' inductive bias. In particular, it was believed that homophily strongly correlates with…

Machine Learning · Computer Science 2023-08-21 Daniele Castellana , Federico Errica

Geometric, topological and graph theory modeling and analysis of biomolecules are of essential importance in the conceptualization of molecular structure, function, dynamics, and transport. On the one hand, geometric modeling provides…

Biomolecules · Quantitative Biology 2016-12-07 Kelin Xia , Guo-Wei Wei

We analyse graphs in which each vertex is assigned random coordinates in a geometric space of arbitrary dimensionality and only edges between adjacent points are present. The critical connectivity is found numerically by examining the size…

Statistical Mechanics · Physics 2009-11-07 Jesper Dall , Michael Christensen

We study the generation of dependent random numbers in a distributed fashion in order to enable privatized distributed learning by networked agents. We propose a method that we refer to as local graph-homomorphic processing; it relies on…

Cryptography and Security · Computer Science 2022-10-28 Elsa Rizk , Stefan Vlaski , Ali H. Sayed

Graphs are ubiquitous data structures for representing interactions between entities. With an emphasis on the use of graphs to represent chemical molecules, we explore the task of learning to generate graphs that conform to a distribution…

Machine Learning · Computer Science 2019-03-08 Qi Liu , Miltiadis Allamanis , Marc Brockschmidt , Alexander L. Gaunt

A metric graph is a 1-dimensional stratified metric space consisting of vertices and edges or loops glued together. Metric graphs can be naturally used to represent and model data that take the form of noisy filamentary structures, such as…

Statistics Theory · Mathematics 2014-02-10 Fabrizio Lecci , Alessandro Rinaldo , Larry Wasserman

Timely and accurate analysis of population-level data is crucial for effective decision-making during public health emergencies such as the COVID-19 pandemic. However, the massive input of semi-structured data, including structured…

Artificial Intelligence · Computer Science 2025-10-08 Daqian Shi , Xiaolei Diao , Jinge Wu , Honghan Wu , Xiongfeng Tang , Felix Naughton , Paulina Bondaronek

We consider a Random Graph Model on $\mathbb{Z}^{d}$ that incorporates the interplay between the statistics of the graph and the underlying space where the vertices are located. Based on a graphical construction of the model as the…

Statistics Theory · Mathematics 2024-06-19 Andressa Cerqueira , Nancy L. Garcia

Recent years have seen tremendous growth of many online social networks such as Facebook, LinkedIn and MySpace. People connect to each other through these networks forming large social communities providing researchers rich datasets to…

Social and Information Networks · Computer Science 2013-11-15 Muhammad Qasim Pasta , Zohaib Jan , Faraz Zaidi , Celine Rozenblat

Can a graph specifying the pattern of connections of a dynamical network be reconstructed from statistical properties of a signal generated by such a system? In this model study, we present an evolutionary algorithm for reconstruction of…

Adaptation and Self-Organizing Systems · Physics 2009-11-07 Mads Ipsen , Alexander S. Mikhailov

Using random walks for sampling has proven advantageous in assessing the characteristics of large and unknown social networks. Several algorithms based on random walks have been introduced in recent years. In the practical application of…

Social and Information Networks · Computer Science 2024-09-18 Tsuyoshi Hasegawa , Shiori Hironaka , Kazuyuki Shudo

Brain age estimation is clinically important as it can provide valuable information in the context of neurodegenerative diseases such as Alzheimer's. Population graphs, which include multimodal imaging information of the subjects along with…

This paper introduces graphemes for constructing and analyzing stochastic processes that describe the evolution of large dynamic graphs. Unlike graphons, which capture the static properties of dense graphs via exchangeability or subgraph…

Probability · Mathematics 2025-04-16 Andreas Greven , Frank den Hollander , Anton Klimovsky , Anita Winter

Recently, graphs have been widely used to represent many different kinds of real world data or observations such as social networks, protein-protein networks, road networks, and so on. In many cases, each node in a graph is associated with…

Social and Information Networks · Computer Science 2016-09-28 Jihwan Lee , Keehwan Park , Sunil Prabhakar

Online social network services provide a platform for human social interactions. Nowadays, many kinds of online interactions generate large-scale social network data. Network analysis helps to mine knowledge and pattern from the…

Social and Information Networks · Computer Science 2021-02-19 Andry Alamsyah , Yahya Peranginangin , Intan Muchtadi-Alamsyah , Budi Rahardjo , Kuspriyanto

This article focuses on the problem of studying shared- and individual-specific structure in replicated networks or graph-valued data. In particular, the observed data consist of $n$ graphs, $G_i, i=1,\ldots,n$, with each graph consisting…

Computation · Statistics 2018-04-13 Lu Wang , Zhengwu Zhang , David Dunson

Designing algorithms that generate networks with a given degree sequence while varying both subgraph composition and distribution of subgraphs around nodes is an important but challenging research problem. Current algorithms lack control of…

Physics and Society · Physics 2015-12-07 Martin Ritchie , Luc Berthouze , Istvan Z Kiss