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Predicting protein function from amino acid sequence remains a central challenge in data-scarce (low-$N$) regimes, limiting machine learning-guided protein design when only small amounts of assay-labeled sequence-function data are…

Machine Learning · Computer Science 2025-08-27 Darin Tsui , Kunal Talreja , Amirali Aghazadeh

Sparse autoencoders (SAEs) have emerged as a powerful tool for interpreting neural networks by extracting the concepts represented in their activations. However, choosing the size of the SAE dictionary (i.e. number of learned concepts)…

Machine Learning · Computer Science 2025-03-25 Bart Bussmann , Noa Nabeshima , Adam Karvonen , Neel Nanda

Audio pretrained models are widely employed to solve various tasks in speech processing, sound event detection, or music information retrieval. However, the representations learned by these models are unclear, and their analysis mainly…

Sparse autoencoders (SAEs) have received considerable recent attention as tools for mechanistic interpretability, showing success at extracting interpretable features even from very large LLMs. However, this research has been largely…

Machine Learning · Computer Science 2025-05-20 Jeremy Budd , Javier Ideami , Benjamin Macdowall Rynne , Keith Duggar , Randall Balestriero

Sparse autoencoders (SAEs) decompose language model representations into a sparse set of linear latent vectors. Recent works have improved SAEs using language model gradients, but these techniques require many expensive backward passes…

Machine Learning · Computer Science 2025-05-28 Matthew Chen , Joshua Engels , Max Tegmark

Sparse Autoencoders (SAEs) have emerged as a powerful framework for machine learning interpretability, enabling the unsupervised decomposition of model representations into a dictionary of abstract, human-interpretable concepts. However, we…

Computer Vision and Pattern Recognition · Computer Science 2025-05-27 Thomas Fel , Ekdeep Singh Lubana , Jacob S. Prince , Matthew Kowal , Victor Boutin , Isabel Papadimitriou , Binxu Wang , Martin Wattenberg , Demba Ba , Talia Konkle

Sparse Autoencoders (SAEs) have emerged as a promising approach for interpreting neural network representations by learning sparse, human-interpretable features from dense activations. We investigate whether incorporating variational…

Machine Learning · Computer Science 2025-10-03 Zachary Baker , Yuxiao Li

Sparse autoencoders (SAEs) have become an important tool for analyzing and interpreting the activation space of transformer-based language models (LMs). However, SAEs suffer several shortcomings that diminish their utility and internal…

Computation and Language · Computer Science 2025-06-27 Ryosuke Takahashi , Tatsuro Inaba , Kentaro Inui , Benjamin Heinzerling

We investigate whether sparse autoencoders (SAEs) can be used to remove knowledge from language models. We use the biology subset of the Weapons of Mass Destruction Proxy dataset and test on the gemma-2b-it and gemma-2-2b-it language…

Machine Learning · Computer Science 2024-11-05 Eoin Farrell , Yeu-Tong Lau , Arthur Conmy

Sparse Autoencoders (SAEs) have become an important tool in mechanistic interpretability, helping to analyze internal representations in both Large Language Models (LLMs) and Vision Transformers (ViTs). By decomposing polysemantic…

Machine Learning · Computer Science 2026-05-11 Jakub Stępień , Marcin Mazur , Jacek Tabor , Przemysław Spurek

Sparse Autoencoders (SAEs) are widely used to interpret neural networks by identifying meaningful concepts from their representations. However, do SAEs truly uncover all concepts a model relies on, or are they inherently biased toward…

Machine Learning · Computer Science 2025-12-03 Sai Sumedh R. Hindupur , Ekdeep Singh Lubana , Thomas Fel , Demba Ba

The rapid advancements in transformer-based language models have revolutionized natural language processing, yet understanding the internal mechanisms of these models remains a significant challenge. This paper explores the application of…

Machine Learning · Computer Science 2025-02-14 Edith Natalia Villegas Garcia , Alessio Ansuini

Sparse autoencoders (SAEs) have become a central tool for interpreting language models. However, two key SAE analyses that remain difficult to scale are (1) matching semantically similar features across multi-layers and (2) compressing…

Machine Learning · Computer Science 2026-05-28 Tue M. Cao , Nguyen Do , My T. Thai

Model internals encode rich information about how a large language model (LLM) processes its training data; however, post-training data engineering largely relies on external signals and ignores rich intrinsic signals lying in model…

Machine Learning · Computer Science 2026-05-27 Yi Jing , Zao Dai , Jinwu Hu , Zijun Yao , Lei Hou , Juanzi Li , Xiaozhi Wang

To truly understand vision models, we must not only interpret their learned features but also validate these interpretations through controlled experiments. While earlier work offers either rich semantics or direct control, few post-hoc…

Computer Vision and Pattern Recognition · Computer Science 2025-11-25 Samuel Stevens , Wei-Lun Chao , Tanya Berger-Wolf , Yu Su

Sparse autoencoders (SAEs) have been used widely to decompose and interpret neural network activations, especially those of transformer language models. One key issue with SAEs is their inability to directly model multidimensional features.…

Machine Learning · Computer Science 2026-05-12 Collin Francel

Sparse autoencoders are usually trained one layer at a time, even though transformer residual stream activations are strongly coupled across depth. This creates a practical problem for multi-layer interventions: different layerwise…

Machine Learning · Computer Science 2026-05-28 Prathyush Poduval , Calvin Yeung , Neel Desai , Mohsen Imani

Large language models (LLMs) store vast amounts of information, making them powerful yet raising privacy and safety concerns when selective knowledge removal is required. Existing unlearning strategies, ranging from gradient-based…

Computation and Language · Computer Science 2025-06-02 Xu Wang , Zihao Li , Benyou Wang , Yan Hu , Difan Zou

Sparse autoencoders (SAEs) enable interpretability research by decomposing entangled model activations into monosemantic features. However, under what circumstances SAEs derive most fine-grained latent features for safety, a low-frequency…

Machine Learning · Computer Science 2026-04-15 Jiaqi Weng , Han Zheng , Hanyu Zhang , Ej Zhou , Qinqin He , Jialing Tao , Hui Xue , Zhixuan Chu , Xiting Wang

Sparse autoencoders (SAEs) extract millions of interpretable features from a language model, but flat feature inventories aren't very useful on their own. Domain concepts get mixed with generic and weakly grounded features, while related…

Artificial Intelligence · Computer Science 2026-04-29 John Winnicki , Abeynaya Gnanasekaran , Eric Darve
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