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This article introduces the pammtools package, which facilitates data transformation, estimation and interpretation of Piece-wise exponential Additive Mixed Models. A special focus is on time-varying effects and cumulative effects of…

Computation · Statistics 2018-06-05 Andreas Bender , Fabian Scheipl

A problem that tends to be ignored in the statistical analysis of experimental data in the language sciences is that responses often constitute time series, which raises the problem of autocorrelated errors. If the errors indeed show…

Applications · Statistics 2016-01-12 R. Harald Baayen , Jacolien van Rij , Cecile de Cat , Simon N. Wood

This is a hands-on introduction to Generalised Additive Mixed Models (GAMMs) in the context of linguistics with a particular focus on dynamic speech analysis (e.g. formant contours, pitch tracks, diachronic change, etc.). The main goal is…

Applications · Statistics 2017-03-17 Márton Sóskuthy

Generalized additive models (GAMs) are favored in many regression and binary classification problems because they are able to fit complex, nonlinear functions while still remaining interpretable. In the first part of this paper, we…

Machine Learning · Computer Science 2019-06-03 Xuezhou Zhang , Sarah Tan , Paul Koch , Yin Lou , Urszula Chajewska , Rich Caruana

Generalized additive models (GAMs) have become a leading modelclass for interpretable machine learning. However, there are many algorithms for training GAMs, and these can learn different or even contradictory models, while being equally…

Machine Learning · Computer Science 2021-06-08 Chun-Hao Chang , Sarah Tan , Ben Lengerich , Anna Goldenberg , Rich Caruana

Causal structure learning has long been the central task of inferring causal insights from data. Despite the abundance of real-world processes exhibiting higher-order mechanisms, however, an explicit treatment of interactions in causal…

Machine Learning · Computer Science 2025-11-07 James Enouen , Yujia Zheng , Ignavier Ng , Yan Liu , Kun Zhang

Symbolic regression has excelled in uncovering equations from physics, chemistry, biology, and related disciplines. However, its effectiveness becomes less certain when applied to experimental data lacking inherent closed-form expressions.…

Machine Learning · Computer Science 2024-04-16 Krzysztof Kacprzyk , Mihaela van der Schaar

The BUGS language offers a very flexible way of specifying complex statistical models for the purposes of Gibbs sampling, while its JAGS variant offers very convenient R integration via the rjags package. However, including smoothers in…

Computation · Statistics 2020-08-11 Simon N Wood

We propose an extensive framework for additive regression models for correlated functional responses, allowing for multiple partially nested or crossed functional random effects with flexible correlation structures for, e.g., spatial,…

Methodology · Statistics 2013-11-26 Fabian Scheipl , Ana-Maria Staicu , Sonja Greven

Variance partitioning methods, which are built upon multivariate statistics, have been widely applied in different taxa and habitats in community ecology. Here, I performed a literature review on the development and application of the…

Populations and Evolution · Quantitative Biology 2014-03-31 Youhua Chen

This study introduces a novel generalized additive mixed model (GAMM) for mortality modelling, utilizing the mortality covariate $k_t$ as proposed by Dastranj-Kolar. Our findings indicate that the GAMM effectively addresses this…

Applications · Statistics 2025-11-18 Reza Dastranj , Martin Kolar

Vine copulas are flexible dependence models using bivariate copulas as building blocks. If the parameters of the bivariate copulas in the vine copula depend on covariates, one obtains a conditional vine copula. We propose an extension for…

Methodology · Statistics 2024-06-21 David Jobst , Annette Möller , Jürgen Groß

The generalized partially linear additive model (GPLAM) is a flexible and interpretable approach to building predictive models. It combines features in an additive manner, allowing each to have either a linear or nonlinear effect on the…

Methodology · Statistics 2018-03-29 Yin Lou , Jacob Bien , Rich Caruana , Johannes Gehrke

We present the R-package mgm for the estimation of k-order Mixed Graphical Models (MGMs) and mixed Vector Autoregressive (mVAR) models in high-dimensional data. These are a useful extensions of graphical models for only one variable type,…

Applications · Statistics 2020-02-13 Jonas M. B. Haslbeck , Lourens J. Waldorp

In the low-dimensional case, the generalized additive coefficient model (GACM) proposed by Xue and Yang [Statist. Sinica 16 (2006) 1423-1446] has been demonstrated to be a powerful tool for studying nonlinear interaction effects of…

Statistics Theory · Mathematics 2015-10-15 Shujie Ma , Raymond J. Carroll , Hua Liang , Shizhong Xu

Interpretability is one of the considerations when applying machine learning to high-stakes fields such as healthcare that involve matters of life safety. Generalized Additive Models (GAMs) enhance interpretability by visualizing shape…

Machine Learning · Computer Science 2025-10-06 Fumin Wang

The conditional autoregressive model is a routinely used statistical model for areal data that arise from, for instances, epidemiological, socio-economic or ecological studies. Various multivariate conditional autoregressive models have…

Methodology · Statistics 2019-07-23 Ye Liang

Gaussian processes (GPs) are widely used as distributions of random effects in linear mixed models, which are fit using the restricted likelihood or the closely-related Bayesian analysis. This article addresses two problems. First, we…

Methodology · Statistics 2018-05-04 Maitreyee Bose , James S. Hodges , Sudipto Banerjee

Due to the availability of large molecular data-sets, covariance models are increasingly used to describe the structure of genetic variation as an alternative to more heavily parametrised biological models. We focus here on a class of…

Applications · Statistics 2013-12-16 Gilles Guillot , René Schilling , Emilio Porcu , Moreno Bevilacqua

Multiplicative mixed models can be applied in a wide range of scientific disciplines, since they are relevant in every situation where an interaction between a fixed effect and a random effect is present. Until now, no R package has been…

Computation · Statistics 2018-11-05 Sofie Pødenphant , Kasper Kristensen , Per B. Brockhoff