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The non-linear response of entangled polymers to shear flow is complicated. Its current understanding is framed mainly as a rheological description in terms of the complex viscosity. However, the full picture requires an assessment of the…

Computational Physics · Physics 2018-08-21 Airidas Korolkovas , Philipp Gutfreund , Max Wolff

In conflict with standard notions of thermodynamics, mesoscopically-sized inclusions (``clusters'') of a solute-rich liquid have been observed in equilibrated solutions of proteins and other molecules. According to a complexation scenario…

Soft Condensed Matter · Physics 2025-09-11 Ilya Davydov , Vassiliy Lubchenko

We solve the stochastic equations for a cluster of parallel bonds with shared constant loading, rebinding and the completely dissociated state as an absorbing boundary. In the small force regime, cluster lifetime grows only logarithmically…

Soft Condensed Matter · Physics 2007-05-23 T. Erdmann , U. S. Schwarz

The morphology and dynamics of polymerization-induced phase separation in the initially homogeneous solution of a non-reactive component in reactive monomers are investigated by incorporating the reaction kinetics into the time-dependent…

Soft Condensed Matter · Physics 2007-05-23 Kaifu Luo

Using a Becker-D\"oring type model including cluster incorporation, we study the possibility of conversion of stable crystals to metastable crystals in a solution by a periodic change of temperature. At low temperature, both stable and…

Statistical Mechanics · Physics 2023-05-03 Hiroyasu Katsuno , Makio Uwaha

We investigate the influence of a shear flow on the process of nucleation. Mesoscopic nonequilibrium thermodynamics is used to derive the Fokker-Planck equation governing the evolution of the cluster size distribution in a metastable phase…

Statistical Mechanics · Physics 2009-11-10 D. Reguera , J. M. Rubi

The formation, movement and gluing of clusters can be described through a system of non local balance laws. Here, the well posedness of this system is obtained, as well as various stability estimates. Remarkably, qualitative properties of…

Analysis of PDEs · Mathematics 2024-10-15 Rinaldo M. Colombo , Mauro Garavello

Resent achievements in statistical theory, namely, a possibility to reproduce almost unlimited Mayer's activity series based on the information about their convergence radius, on the one hand, and generalization of the lattice statistics by…

This study presents an enhanced method for analyzing cluster dynamics, with a particular focus on tracking clusters' continuity over time using time-series data from molecular dynamics (MD) simulation. The proposed method was applied to…

Soft Condensed Matter · Physics 2025-03-04 Ryo Nakanishi , Koji Hukushima

We present simulations on a binary blend of bead-spring polymer chains. The introduction of monomer size disparity yields very different relaxation times for each component of the blend. Competition between two different arrest mechanisms,…

Soft Condensed Matter · Physics 2007-05-23 Angel J. Moreno , Juan Colmenero

This paper compares theory and experiment for the kinetics of time-dependent sedimentation. We discuss non-interacting suspensions and colloids which may exhibit behavior similar to the one-dimensional motion of compressible gas. The…

Condensed Matter · Physics 2016-08-31 Sergei E. Esipov

We develop a static quantum embedding scheme that utilizes different levels of approximations to coupled cluster (CC) theory for an active fragment region and its environment. To reduce the computational cost, we solve the local fragment…

Chemical Physics · Physics 2024-11-13 Avijit Shee , Fabian M. Faulstich , Birgitta Whaley , Lin Lin , Martin Head-Gordon

An off-lattice Monte Carlo algorithm for solutions of equilibrium polymers (EP) is proposed. At low and moderate densities this is shown to reproduce faithfully the (static) properties found recently for flexible linear EP using a lattice…

Statistical Mechanics · Physics 2009-10-31 A. Milchev , J. P. Wittmer , D. P. Landau

We propose a model for describing the growth on an untreated tumor, which is characterized in a simple way by a minimal number of parameters with a well-defined physical interpretation. The model is motivated by invoking the Master Equation…

Populations and Evolution · Quantitative Biology 2007-05-23 José F. Nieves , Marcelo R. Ubriaco

Using high precision Monte Carlo simulations and a mean-field theory, we explore coarsening phenomena in a simple driven diffusive system. The model is reminiscent of vehicular traffic on a two-lane ring road. At sufficiently high density,…

Statistical Mechanics · Physics 2009-11-11 I. T. Georgiev , B. Schmittmann , R. K. P. Zia

The aims of this paper are to propose, construct and analyse microscopic kinetic models for the emergence of long chains of RNA from monomeric beta-D-ribonucleotide precursors in prebiotic circumstances. Our theory starts out from similar…

adap-org · Physics 2007-05-23 Jonathan A. D. Wattis , Peter V. Coveney

A nonequilibrium molecular dynamics computer simulation on microsegregated solutions of symmetrical diblock copolymers is reported. As the polymer concentration increases, the system undergoes phase transitions in the following order: body…

Soft Condensed Matter · Physics 2007-05-23 Igor Rychkov , Kenichi Yoshikawa

In this paper we prove the global in time solvability of the continuous growth--fragmentation--coagulation equation with unbounded coagulation kernels, in spaces of functions having finite moments of sufficiently high order. The main tool…

Analysis of PDEs · Mathematics 2021-04-28 Jacek Banasiak , Wilson Lamb

An active system consisting of many self-spinning dimers is simulated, and a distinct local rotational jamming transition is observed as the density increases. In the low density regime, the system stays in an absorbing state, in which each…

Soft Condensed Matter · Physics 2022-04-29 Rui Liu , Jianxiao Gong , Mingcheng Yang , Ke Chen

The exchange-driven growth model describes a process in which pairs of clusters interact through the exchange of single monomers. The rate of exchange is given by an interaction kernel $K$ which depends on the size of the two interacting…

Mathematical Physics · Physics 2020-06-04 André Schlichting
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