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We have developed a novel CT image analysis package named AnatomyArchive, built on top of the recent full body segmentation model TotalSegmentator. It provides automatic target volume selection and deselection capabilities according to…

Image and Video Processing · Electrical Eng. & Systems 2025-07-21 Lei Xu , Torkel B Brismar

We present an automatic method to describe clinically useful information about scanning, and to guide image interpretation in ultrasound (US) videos of the fetal heart. Our method is able to jointly predict the visibility, viewing plane,…

Computer Vision and Pattern Recognition · Computer Science 2017-07-04 Weilin Huang , Christopher P. Bridge , J. Alison Noble , Andrew Zisserman

Echocardiography is an essential medical technique for diagnosing cardiovascular diseases, but its high operational complexity has led to a shortage of trained professionals. To address this issue, we introduce a novel probe movement…

Computer Vision and Pattern Recognition · Computer Science 2025-10-13 Haojun Jiang , Teng Wang , Zhenguo Sun , Yulin Wang , Yang Yue , Yu Sun , Ning Jia , Meng Li , Shaqi Luo , Shiji Song , Gao Huang

Non-invasive detection of cardiovascular disorders from radiology scans requires quantitative image analysis of the heart and its substructures. There are well-established measurements that radiologists use for diseases assessment such as…

Machine Learning · Statistics 2017-08-04 Aliasghar Mortazi , Jeremy Burt , Ulas Bagci

The accurate segmentation of Coronary Computed Tomography Angiography (CCTA) images holds substantial clinical value for the early detection and treatment of Coronary Heart Disease (CHD). The Transformer, utilizing a self-attention…

Image and Video Processing · Electrical Eng. & Systems 2023-10-10 Chenchu Xu , Meng Li , Xue Wu

The 3D volumetric shape of the heart's left ventricle (LV) myocardium (MYO) wall provides important information for diagnosis of cardiac disease and invasive procedure navigation. Many cardiac image segmentation methods have relied on…

Computer Vision and Pattern Recognition · Computer Science 2021-02-23 Meng Ye , Qiaoying Huang , Dong Yang , Pengxiang Wu , Jingru Yi , Leon Axel , Dimitris Metaxas

Echocardiogram video plays a crucial role in analysing cardiac function and diagnosing cardiac diseases. Current deep neural network methods primarily aim to enhance diagnosis accuracy by incorporating prior knowledge, such as segmenting…

Image and Video Processing · Electrical Eng. & Systems 2024-10-29 Jiewen Yang , Yiqun Lin , Bin Pu , Jiarong Guo , Xiaowei Xu , Xiaomeng Li

Computed Tomography Coronary Angiography (CTCA) is a non-invasive method to evaluate coronary artery anatomy and disease. CTCA is ideal for geometry reconstruction to create virtual models of coronary arteries. To our knowledge there is no…

Computer Vision and Pattern Recognition · Computer Science 2022-11-04 Ramtin Gharleghi , Dona Adikari , Katy Ellenberger , Mark Webster , Chris Ellis , Arcot Sowmya , Sze-Yuan Ooi , Susann Beier

HOTTBOX is a Python library for exploratory analysis and visualisation of multi-dimensional arrays of data, also known as tensors. The library includes methods ranging from standard multi-way operations and data manipulation through to…

Mathematical Software · Computer Science 2021-12-02 Ilya Kisil , Giuseppe G. Calvi , Bruno S. Dees , Danilo P. Mandic

Coronary angiography is the gold standard imaging technique for studying and diagnosing coronary artery disease. However, the resulting 2D X-ray projections lose 3D information and exhibit visual ambiguities. In this work, we aim to…

Computer Vision and Pattern Recognition · Computer Science 2023-12-20 Yifan Wu , Rohit Jena , Mehmet Gulsun , Vivek Singh , Puneet Sharma , James C. Gee

To facilitate diagnosis on cardiac ultrasound (US), clinical practice has established several standard views of the heart, which serve as reference points for diagnostic measurements and define viewports from which images are acquired.…

Image and Video Processing · Electrical Eng. & Systems 2024-03-04 Sarina Thomas , Cristiana Tiago , Børge Solli Andreassen , Svein Arne Aase , Jurica Šprem , Erik Steen , Anne Solberg , Guy Ben-Yosef

Localization of anatomical structures is a prerequisite for many tasks in medical image analysis. We propose a method for automatic localization of one or more anatomical structures in 3D medical images through detection of their presence…

Computer Vision and Pattern Recognition · Computer Science 2017-04-20 Bob D. de Vos , Jelmer M. Wolterink , Pim A. de Jong , Tim Leiner , Max A. Viergever , Ivana Išgum

The exploitation of large-scale population data has the potential to improve healthcare by discovering and understanding patterns and trends within this data. To enable high throughput analysis of cardiac imaging data automatically, a…

Image and Video Processing · Electrical Eng. & Systems 2019-01-14 Rahman Attar , Marco Pereanez , Ali Gooya , Xenia Alba , Le Zhang , Stefan K. Piechnik , Stefan Neubauer , Steffen E. Petersen , Alejandro F. Frangi

Cardiac parametric mapping is useful for evaluating cardiac fibrosis and edema. Parametric mapping relies on single-shot heartbeat-by-heartbeat imaging, which is susceptible to intra-shot motion during the imaging window. However, reducing…

Image and Video Processing · Electrical Eng. & Systems 2025-03-25 Calder D. Sheagren , Brenden T. Kadota , Jaykumar H. Patel , Mark Chiew , Graham A. Wright

Despite coronary artery calcium scoring being considered a largely solved problem within the realm of medical artificial intelligence, this paper argues that significant improvements can still be made. By shifting the focus from pathology…

Echocardiography is essential to modern cardiology. However, human interpretation limits high throughput analysis, limiting echocardiography from reaching its full clinical and research potential for precision medicine. Deep learning is a…

Computer Vision and Pattern Recognition · Computer Science 2017-06-28 Ali Madani , Ramy Arnaout , Mohammad Mofrad , Rima Arnaout

Myocardial infarction (MI) is one of the most prevalent cardiovascular diseases with associated clinical decision-making typically based on single-valued imaging biomarkers. However, such metrics only approximate the complex 3D structure…

Computer Vision and Pattern Recognition · Computer Science 2023-07-17 Marcel Beetz , Yilong Yang , Abhirup Banerjee , Lei Li , Vicente Grau

Background: Coronary artery bypass grafting (CABG) planning requires advanced spatial visualization and consideration of coronary artery depth, calcification, and pericardial adhesions. Objective: To develop and evaluate a dynamic…

Medical Physics · Physics 2025-10-02 Shuo Wang , Tong Ren , Nan Cheng , Li Zhang , Rong Wang

To facilitate flexible and efficient structural bioinformatics analyses, new functionality for three-dimensional structure processing and analysis has been introduced into PyCogent -- a popular feature-rich framework for sequence-based…

Biomolecules · Quantitative Biology 2018-10-01 Marcin Cieslik , Zygmunt Derewenda , Cameron Mura

3D motion estimation from cine cardiac magnetic resonance (CMR) images is important for the assessment of cardiac function and diagnosis of cardiovascular diseases. Most of the previous methods focus on estimating pixel-/voxel-wise motion…

Image and Video Processing · Electrical Eng. & Systems 2022-09-07 Qingjie Meng , Wenjia Bai , Tianrui Liu , Declan P O'Regan , Daniel Rueckert