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Within clinical, biomedical, and translational science, an increasing number of projects are adopting graphs for knowledge representation. Graph-based data models elucidate the interconnectedness between core biomedical concepts, enable…

Knowledge graphs (KGs) enhance the performance of large language models (LLMs) and search engines by providing structured, interconnected data that improves reasoning and context-awareness. However, KGs only focus on text data, thereby…

Computation and Language · Computer Science 2024-08-09 Khai Le-Duc , Quy-Anh Dang , Tan-Hanh Pham , Truong-Son Hy

The problem of answering questions using knowledge from pre-trained language models (LMs) and knowledge graphs (KGs) presents two challenges: given a QA context (question and answer choice), methods need to (i) identify relevant knowledge…

Computation and Language · Computer Science 2022-12-14 Michihiro Yasunaga , Hongyu Ren , Antoine Bosselut , Percy Liang , Jure Leskovec

Navigating, visualizing, and discovery in graph data is frequently a difficult prospect. This is especially true for knowledge graphs (KGs), due to high number of possible labeled connections to other data. However, KGs are frequently…

Human-Computer Interaction · Computer Science 2025-08-12 Antrea Christou , Cogan Shimizu

Structured and unstructured data and facts about drugs, genes, protein, viruses, and their mechanism are spread across a huge number of scientific articles. These articles are a large-scale knowledge source and can have a huge impact on…

Artificial Intelligence · Computer Science 2023-02-24 Md. Rezaul Karim , Lina Molinas Comet , Oya Beyan , Dietrich Rebholz-Schuhmann , Stefan Decker

Knowledge graph (KG) embedding has been used to benefit the diagnosis of animal diseases by analyzing electronic medical records (EMRs), such as notes and veterinary records. However, learning representations to capture entities and…

Artificial Intelligence · Computer Science 2023-09-08 Van Thuy Hoang , Sang Thanh Nguyen , Sangmyeong Lee , Jooho Lee , Luong Vuong Nguyen , O-Joun Lee

Knowledge Graphs (KGs) have gained considerable attention recently from both academia and industry. In fact, incorporating graph technology and the copious of various graph datasets have led the research community to build sophisticated…

Artificial Intelligence · Computer Science 2020-06-03 Bilal Abu-Salih , Marwan Al-Tawil , Ibrahim Aljarah , Hossam Faris , Pornpit Wongthongtham

Knowledge graphs (KGs) of real-world facts about entities and their relationships are useful resources for a variety of natural language processing tasks. However, because knowledge graphs are typically incomplete, it is useful to perform…

Computation and Language · Computer Science 2020-10-28 Dat Quoc Nguyen

When knowledge graphs (KGs) are automatically extracted from text, are they accurate enough for downstream analysis? Unfortunately, current annotated datasets can not be used to evaluate this question, since their KGs are highly…

Computation and Language · Computer Science 2025-05-19 Erica Cai , Sean McQuade , Kevin Young , Brendan O'Connor

Retrieval-augmented generation (RAG) has emerged as a promising technology for addressing hallucination issues in the responses generated by large language models (LLMs). Existing studies on RAG primarily focus on applying semantic-based…

Computation and Language · Computer Science 2025-02-12 Xiangrong Zhu , Yuexiang Xie , Yi Liu , Yaliang Li , Wei Hu

Knowledge graphs (KGs) have emerged as a powerful framework for representing and integrating complex biomedical information. However, assembling KGs from diverse sources remains a significant challenge in several aspects, including entity…

Machine Learning · Computer Science 2023-10-10 Yijia Xiao , Dylan Steinecke , Alexander Russell Pelletier , Yushi Bai , Peipei Ping , Wei Wang

A knowledge graph (KG) consists of a set of interconnected typed entities and their attributes. Recently, KGs are popularly used as the auxiliary information to enable more accurate, explainable, and diverse user preference recommendations.…

Information Retrieval · Computer Science 2022-04-19 Yuntao Du , Xinjun Zhu , Lu Chen , Ziquan Fang , Yunjun Gao

Current science communication has a number of drawbacks and bottlenecks which have been subject of discussion lately: Among others, the rising number of published articles makes it nearly impossible to get an overview of the state of the…

Digital Libraries · Computer Science 2020-11-24 Arthur Brack , Anett Hoppe , Markus Stocker , Sören Auer , Ralph Ewerth

To alleviate data sparsity and cold-start problems of traditional recommender systems (RSs), incorporating knowledge graphs (KGs) to supplement auxiliary information has attracted considerable attention recently. However, simply integrating…

Information Retrieval · Computer Science 2022-01-04 Yankai Chen , Yaming Yang , Yujing Wang , Jing Bai , Xiangchen Song , Irwin King

Large Language Models (LLMs) are being adopted at an unprecedented rate, yet still face challenges in knowledge-intensive domains like biomedicine. Solutions such as pre-training and domain-specific fine-tuning add substantial computational…

Knowledge representation learning has been commonly adopted to incorporate knowledge graph (KG) into various online services. Although existing knowledge representation learning methods have achieved considerable performance improvement,…

Machine Learning · Computer Science 2022-05-18 Binbin Hu , Zhiyang Hu , Zhiqiang Zhang , Jun Zhou , Chuan Shi

Biomedical knowledge graphs (KGs) hold rich information on entities such as diseases, drugs, and genes. Predicting missing links in these graphs can boost many important applications, such as drug design and repurposing. Recent work has…

Computation and Language · Computer Science 2021-09-22 Rahul Nadkarni , David Wadden , Iz Beltagy , Noah A. Smith , Hannaneh Hajishirzi , Tom Hope

Personalized messaging plays an essential role in improving communication in areas such as healthcare, education, and professional engagement. This paper introduces a framework that uses the Knowledge Graph (KG) to dynamically rephrase…

Artificial Intelligence · Computer Science 2025-03-19 Rajeev Kumar , Harishankar Kumar , Kumari Shalini

Knowledge graphs (KGs) such as DBpedia, Freebase, YAGO, Wikidata, and NELL were constructed to store large-scale, real-world facts as (subject, predicate, object) triples -- that can also be modeled as a graph, where a node (a subject or an…

Databases · Computer Science 2023-05-25 Arijit Khan

Knowledge graphs (KGs) have become the preferred technology for representing, sharing and adding knowledge to modern AI applications. While KGs have become a mainstream technology, the RDF/SPARQL-centric toolset for operating with them at…