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We investigate the possibility of extending the notion of temperature in a stochastic model for the RNA/protein folding driven out of equilibrium. We simulate the dynamics of a small RNA hairpin subject to an external pulling force, which…

Statistical Mechanics · Physics 2021-08-02 Marco Ancona , Alessandro Bentivoglio , Michele Caraglio , Giuseppe Gonnella , Alessandro Pelizzola

We investigate a simplified model of two fully connected magnetic systems maintained at different temperatures by virtue of being connected to two independent thermal baths while simultaneously being inter-connected with each other. Using…

Statistical Mechanics · Physics 2015-06-15 Roberto C. Alamino , Amit Chattopadhyay , David Saad

The theoretical understanding of active matter, which is driven out of equilibrium by directed motion, is still fragmental and model oriented. Stochastic thermodynamics, on the other hand, is a comprehensive theoretical framework for driven…

Statistical Mechanics · Physics 2017-01-05 Thomas Speck

Quantum criticality has attracted considerable attention both theoretically and experimentally as a way to describe part of the phase diagram of strongly correlated systems. A scale-invariant fluctuation spectrum at a quantum critical point…

Strongly Correlated Electrons · Physics 2015-10-28 Stefan Kirchner , Qimiao Si

The fundamental insight into Brownian motion by Einstein is that all substances exhibit continual fluctuations due to thermal agitation balancing with the frictional resistance. However, even at thermal equilibrium, biological activity can…

Soft Condensed Matter · Physics 2014-02-19 Soya Shinkai , Yuichi Togashi

Biologically driven non-equilibrium fluctuations are often characterized by their non-Gaussianity or by an "effective temperature", which is frequency dependent and higher than the ambient temperature. We address these two measures…

Biological Physics · Physics 2011-06-16 Eyal Ben-Isaac , YongKeun Park , Gabriel Popescu , Frank L. H. Brown , Nir S. Gov , Yair Shokef

Stochastic thermodynamics as reviewed here systematically provides a framework for extending the notions of classical thermodynamics like work, heat and entropy production to the level of individual trajectories of well-defined…

Statistical Mechanics · Physics 2015-06-05 Udo Seifert

Self-propulsion allows living systems to display unusual collective behavior. Unlike passive systems in thermal equilibrium, active matter systems are not constrained by conventional thermodynamic laws. A question arises however as to what…

Soft Condensed Matter · Physics 2015-03-18 Sho C. Takatori , John F. Brady

Using the gauge-gravity duality, we argue that for a certain class of out-of-equilibrium steady-state systems in contact with a thermal background at a given temperature, the macroscopic physics can be captured by an effective thermodynamic…

High Energy Physics - Theory · Physics 2015-02-26 Arnab Kundu , Sandipan Kundu

Thermodynamical arguments are known to be useful in the construction of physically motivated Lyapunov functionals for nonlinear stability analysis of spatially homogeneous equilibrium steady states in thermodynamically isolated systems.…

Statistical Mechanics · Physics 2019-08-06 Miroslav Bulíček , Josef Málek , Vít Průša

In order to describe the thermodynamics of the glassy systems it has been recently introduced an extra parameter also called effective temperature which generalizes the fluctuation-dissipation theorem (FDT) to systems off-equilibrium and…

Disordered Systems and Neural Networks · Physics 2015-06-24 Adan Garriga , Felix Ritort

We propose a theory based on simple physical arguments that describes a non equilibrium steady-state by a temperature-like parameter (an "effective temperature"). We show how one can predict the effective temperature as a function of the…

Statistical Mechanics · Physics 2012-01-31 Ido Regev , Xiangdong Ding , Turab Lookman

Thermal fluctuations constantly and evenly excite all vibrational modes in an equilibrium crystal. As the temperature rises, these fluctuations promote the formation of defects and eventually melting. In active solids, the self-propulsion…

Soft Condensed Matter · Physics 2024-09-25 Helena Massana-Cid , Claudio Maggi , Nicoletta Gnan , Giacomo Frangipane , Roberto Di Leonardo

In nature, objects which are in thermal contact with each other, usually approach the same temperature, unless a heat source (or sink) cherishes a persistent flow of heat. Accordingly, in a well-isolated apartment flat, most items are at a…

Soft Condensed Matter · Physics 2019-12-04 Suvendu Mandal , Benno Liebchen , Hartmut Löwen

We calculate current-current correlation functions and find an expression for the zero-frequency noise of multiterminal systems driven by harmonically time-dependent voltages within the Keldysh non-equilibrium Green's functions formalism.…

Mesoscale and Nanoscale Physics · Physics 2012-08-02 Alvaro Caso , Liliana Arrachea , Gustavo S. Lozano

We propose a model for the dynamics of a probe embedded in a living cell, where both thermal fluctuations and nonequilibrium activity coexist. The model is based on a confining harmonic potential describing the elastic cytoskeletal matrix,…

Biological Physics · Physics 2015-06-18 É. Fodor , M. Guo , N. S. Gov , P. Visco , D. A. Weitz , F. van Wijland

The definition of a nonequilibrium temperature through generalized fluctuation-dissipation relations relies on the independence of the fluctuation-dissipation temperature from the observable considered. We argue that this observable…

Statistical Mechanics · Physics 2015-03-13 Kirsten Martens , Eric Bertin , Michel Droz

A colloidal particle immersed in a bath of bacteria is a typical example of a passive particle in an active bath. To model this, we take an overdamped harmonically trapped particle subjected to a thermal and a non-equilibrium noise arising…

Statistical Mechanics · Physics 2018-08-02 Subhasish Chaki , Rajarshi Chakrabarti

We report on the energy transport between two coupled probes in contact with granular thermostats at different temperatures. In our experiment, two identical blades, which are electromechanically coupled, are immersed in two granular gases…

Statistical Mechanics · Physics 2015-06-19 Charles-Édouard Lecomte , Antoine Naert

The violations of the fluctuation-dissipation theorem are analyzed for a trap model with a gausssian density of states. In this model, the system reaches thermal equilibrium for long times after a quench to any finite temperature and…

Soft Condensed Matter · Physics 2015-06-25 Gregor Diezemann