English
Related papers

Related papers: Large-scale Multi-sequence Pretraining for General…

200 papers

Diffusion MRI microstructure fitting is nonconvex and often performed voxelwise, which limits fiber peak recovery in narrow crossings. This work introduces PRISM, a differentiable analysis-by-synthesis framework that fits an explicit…

Computer Vision and Pattern Recognition · Computer Science 2026-04-02 Mohamed Abouagour , Atharva Shah , Eleftherios Garyfallidis

Foundation models, pre-trained on large image datasets and capable of capturing rich feature representations, have recently shown potential for zero-shot image registration. However, their performance has mostly been tested in the context…

Image and Video Processing · Electrical Eng. & Systems 2025-08-12 Hanxue Gu , Yaqian Chen , Nicholas Konz , Qihang Li , Maciej A. Mazurowski

As large language models (LLMs) continue to revolutionize AI research, there is a growing interest in building large-scale brain foundation models to advance neuroscience. While most existing brain foundation models are pre-trained on…

Neurons and Cognition · Quantitative Biology 2026-02-11 Xinxu Wei , Kanhao Zhao , Yong Jiao , Lifang He , Yu Zhang

Magnetic resonance imaging (MRI) is a cornerstone of clinical neuroimaging, yet conventional MRIs provide qualitative information heavily dependent on scanner hardware and acquisition settings. While quantitative MRI (qMRI) offers intrinsic…

Medical image segmentation is fundamental to clinical decision-making, yet existing models remain fragmented. They are usually trained on single knowledge sources and specific to individual tasks, modalities, or organs. This fragmentation…

Computer Vision and Pattern Recognition · Computer Science 2025-10-01 Bangwei Guo , Yunhe Gao , Meng Ye , Difei Gu , Yang Zhou , Leon Axel , Dimitris Metaxas

Cardiac MRI allows for a comprehensive assessment of myocardial structure, function and tissue characteristics. Here we describe a foundational vision system for cardiac MRI, capable of representing the breadth of human cardiovascular…

Medical image segmentation is a critical component in clinical practice, facilitating accurate diagnosis, treatment planning, and disease monitoring. However, existing methods, often tailored to specific modalities or disease types, lack…

Image and Video Processing · Electrical Eng. & Systems 2024-04-02 Jun Ma , Yuting He , Feifei Li , Lin Han , Chenyu You , Bo Wang

Multi-parametric magnetic resonance imaging (mpMRI) exams have various series types acquired with different imaging protocols. The DICOM headers of these series often have incorrect information due to the sheer diversity of protocols and…

Image and Video Processing · Electrical Eng. & Systems 2025-06-19 Boah Kim , Tejas Sudharshan Mathai , Kimberly Helm , Peter A. Pinto , Ronald M. Summers

The segmentation foundation model, e.g., Segment Anything Model (SAM), has attracted increasing interest in the medical image community. Early pioneering studies primarily concentrated on assessing and improving SAM's performance from the…

Image and Video Processing · Electrical Eng. & Systems 2024-06-19 Qin Li , Yizhe Zhang , Yan Li , Jun Lyu , Meng Liu , Longyu Sun , Mengting Sun , Qirong Li , Wenyue Mao , Xinran Wu , Yajing Zhang , Yinghua Chu , Shuo Wang , Chengyan Wang

Unrolled neural networks have recently achieved state-of-the-art accelerated MRI reconstruction. These networks unroll iterative optimization algorithms by alternating between physics-based consistency and neural-network based…

Image and Video Processing · Electrical Eng. & Systems 2022-07-19 Batu Ozturkler , Arda Sahiner , Tolga Ergen , Arjun D Desai , Christopher M Sandino , Shreyas Vasanawala , John M Pauly , Morteza Mardani , Mert Pilanci

Foundation models (FMs) have shown great promise in medical imaging, but most FMs are trained on unimodal data within isolated domains, such as brain MRI alone. Human aging and disease arise through coordinated biological processes across…

Computer Vision and Pattern Recognition · Computer Science 2026-05-11 Qiangqiang Wu , Grace McIlvain , Zhou Yu , Junhao Wen

Synthetic training has recently advanced brain MRI segmentation by enabling contrast-agnostic models trained entirely on generated data. However, most existing approaches rely on hundreds of automatically labeled templates, introducing…

Computer Vision and Pattern Recognition · Computer Science 2026-05-05 Romain Valabregue , Ines Khemir , Eric Badinet , François Rousseau , Guillaume Auzias , Reuben Dorent

Statistical Shape Modeling (SSM) effectively analyzes anatomical variations within populations but is limited by the need for manual localization and segmentation, which relies on scarce medical expertise. Recent advances in deep learning…

Computer Vision and Pattern Recognition · Computer Science 2024-07-10 Janmesh Ukey , Tushar Kataria , Shireen Y. Elhabian

Current artificial intelligence models for medical imaging are predominantly single modality and single disease. Attempts to create multimodal and multi-disease models have resulted in inconsistent clinical accuracy. Furthermore, training…

Purpose: Automated ultrasound image analysis is challenging due to anatomical complexity and limited annotated data. To tackle this, we take a data-centric approach, assembling the largest public ultrasound segmentation dataset and training…

Image and Video Processing · Electrical Eng. & Systems 2025-11-13 Adrien Meyer , Aditya Murali , Farahdiba Zarin , Didier Mutter , Nicolas Padoy

This study investigates the impact of self-supervised pretraining of 3D semantic segmentation models on a large-scale, domain-specific dataset. We introduce BRAINS-45K, a dataset of 44,756 brain MRI volumes from public sources, the largest…

Image and Video Processing · Electrical Eng. & Systems 2024-08-16 Asbjørn Munk , Jakob Ambsdorf , Sebastian Llambias , Mads Nielsen

Deep neural networks have been extensively studied for undersampled MRI reconstruction. While achieving state-of-the-art performance, they are trained and deployed specifically for one anatomy with limited generalization ability to another…

Computer Vision and Pattern Recognition · Computer Science 2021-03-10 Xinwen Liu , Jing Wang , Feng Liu , S. Kevin Zhou

Colorectal cancer (CRC) remains the third most prevalent malignancy globally, with approximately 154,000 new cases and 54,000 projected deaths anticipated for 2025. The recent advancement of foundation models in computational pathology has…

Computer Vision and Pattern Recognition · Computer Science 2025-10-17 Usama Sajjad , Abdul Rehman Akbar , Ziyu Su , Deborah Knight , Wendy L. Frankel , Metin N. Gurcan , Wei Chen , Muhammad Khalid Khan Niazi

Summary: SAMRI is an MRI-specialized adaptation of the Segment Anything Model achieving superior whole-body MRI segmentation, particularly for small and clinically critical structures, through box and point prompts for rapid annotation.…

Image and Video Processing · Electrical Eng. & Systems 2026-05-19 Zhao Wang , Wei Dai , Thuy Thanh Dao , Steffen Bollmann , Hongfu Sun , Craig Engstrom , Shekhar S. Chandra

Multimodal Large Language Models (MLLMs) have demonstrated remarkable capabilities in vision-language tasks. However, these models often infer and reveal sensitive biometric attributes such as race, gender, age, body weight, and eye color;…

Computer Vision and Pattern Recognition · Computer Science 2025-10-08 Younggun Kim , Sirnam Swetha , Fazil Kagdi , Mubarak Shah