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Simple nonlinear dynamical systems with multiple stable stationary states are often taken as models for switchlike biological systems. This paper considers the interaction of multiple such simple multistable systems when they are embedded…

Quantitative Methods · Quantitative Biology 2008-04-10 Dennis Cates Wylie

Scaffold proteins organize cellular processes by bringing signaling molecules into interaction, sometimes by forming large signalosomes. Several of these scaffolds are known to polymerize. Their assemblies should therefore not be understood…

Quantitative Methods · Quantitative Biology 2020-03-06 Andrés Ortiz-Muñoz , Héctor F. Medina-Abarca , Walter Fontana

Three-body interactions have been found in physics, biology, and sociology. To investigate their effect on dynamical systems, as a first step, we study numerically and theoretically a system of phase oscillators with three-body interaction.…

Adaptation and Self-Organizing Systems · Physics 2014-01-15 Takuma Tanaka , Toshio Aoyagi

Single-loop elastic rings can be folded into multi-loop equilibrium configurations. In this paper, the stability of several such multi-loop states which are either circular or straight are investigated analytically and illustrated by…

Applied Physics · Physics 2023-04-06 Sophie Leanza , Ruike Renee Zhao , John W. Hutchinson

Stable bound quantum states are ubiquitous in nature. Mostly, they result from the interaction of only pairs of particles, so called two-body interactions, even when large complex many-particle structures are formed. We show that…

Strongly Correlated Electrons · Physics 2022-09-15 Gary Schmiedinghoff , Leanna Müller , Umesh Kumar , Götz S. Uhrig , Benedikt Fauseweh

All interesting and fascinating collective properties of a complex system arise from the intricate way in which its components interact. Various systems in physics, biology, social sciences and engineering have been successfully modelled as…

Adaptation and Self-Organizing Systems · Physics 2021-04-23 L. V. Gambuzza , F. Di Patti , L. Gallo , S. Lepri , M. Romance , R. Criado , M. Frasca , V. Latora , S. Boccaletti

Dissipative quantum systems can under appropriate conditions exhibit bi- or multi-partite entanglement at the steady state. The presence and properties of these quantum correlations depend on the relevant model parameters. Here, we…

Quantum Physics · Physics 2024-09-26 Alan Kahan , Cecilia Cormick

Proteins with multiple binding sites play important roles in cell signaling systems by nucleating protein complexes in which, for example, enzymes and substrates are co-localized. Proteins that specialize in this function are called by a…

Molecular Networks · Quantitative Biology 2011-09-12 Jin Yang , William S. Hlavacek

Single receptor-ligand bonds have finite lifetimes, so that biological systems can dynamically react to changes in their environment. In cell adhesion, adhesion bonds usually act cooperatively in adhesion clusters. Outside the cellular…

Soft Condensed Matter · Physics 2007-05-23 T. Erdmann , U. S. Schwarz

While interdependent systems have usually been associated with increased fragility, we show that strengthening the interdependence between dynamical processes on different networks can make them more robust. By coupling the dynamics of…

Adaptation and Self-Organizing Systems · Physics 2017-08-09 R. K. Singh , Sitabhra Sinha

We solve the stochastic equations for a cluster of parallel bonds with shared constant loading, rebinding and the completely dissociated state as an absorbing boundary. In the small force regime, cluster lifetime grows only logarithmically…

Soft Condensed Matter · Physics 2007-05-23 T. Erdmann , U. S. Schwarz

Bistability is a major mechanism for cellular decision making and usually results from positive feedback in biochemical control systems. Here we show theoretically that bistability between unbound and bound states of adhesion clusters…

Subcellular Processes · Quantitative Biology 2010-02-24 T. Erdmann , U. S. Schwarz

We study the dynamics of a finite chain of diffusively coupled Lorenz oscillators with periodic boundary conditions. Such rings possess infinitely many fixed states, some of which are observed to be stable. It is shown that there exists a…

Statistical Mechanics · Physics 2007-05-23 Kresimir Josic , C. Eugene Wayne

Many biological and synthetic systems are suspensions of oriented, actively-moving components. Unlike in passive suspensions, the interplay between orientational order, active flows, and interactions with boundaries gives rise to…

Soft Condensed Matter · Physics 2024-11-25 Alejandro Martinez-Calvo , Sujit S. Datta

We investigate how to enhance entanglement in the steady state of interacting two-level systems. The steady state is reached by spontaneous decay of the individual systems. When we additionally couple them to a dissipative two-level ancilla…

Quantum Physics · Physics 2015-12-09 Joachim Fischbach , Matthias Freyberger

We will show how it is possible to generate entangled states out of unentangled ones on a bipartite system by means of dynamical boundary conditions. The auxiliary system is defined by a symmetric but not self-adjoint Hamiltonian and the…

Quantum Physics · Physics 2015-01-15 A. Ibort , G. Marmo , J. M. Perez-Pardo

Complex diseases can be modeled as damage to intracellular networks that results in abnormal cell behaviors. Network-based dynamic models such as Boolean models have been employed to model a variety of biological systems including those…

Biological Physics · Physics 2016-12-30 Gang Yang , Colin Campbell , Réka Albert

Entangled systems are prevalent in both biological and synthetic materials. This study examines the stable configurations of weaves consisting of two families of intertwined threads, such as warp and weft threads. By analyzing the steepest…

Differential Geometry · Mathematics 2026-04-22 Motoko Kotani , Hisashi Naito , Naoki Sakata , Eriko Shinkawa

Signaling events in eukaryotic cells are often guided by a scaffolding protein. Scaffold proteins assemble multiple proteins in a spatially localized signaling complex and exert numerous physical effects on signaling pathways. To study…

Subcellular Processes · Quantitative Biology 2009-11-13 Jason W. Locasale

Multidimensional systems coupled via complex networks are widespread in nature and thus frequently invoked for a large plethora of interesting applications. From ecology to physics, individual entities in mutual interactions are grouped in…

Physics and Society · Physics 2018-11-21 Giulia Cencetti , Franco Bagnoli , Giorgio Battistelli , Luigi Chisci , Duccio Fanelli
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