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Dual graphs have been applied to model RNA secondary structures. The purpose of the paper is two-fold: we present new graph-theoretic properties of dual graphs to validate the further analysis and classification of RNAs using these…

Quantitative Methods · Quantitative Biology 2016-01-19 Louis Petingi , Tamar Schlick

We give an algorithm that, given an $n$-vertex graph $G$ and an integer $k$, in time $2^{O(k)} n$ either outputs a tree decomposition of $G$ of width at most $2k + 1$ or determines that the treewidth of $G$ is larger than $k$. This is the…

Data Structures and Algorithms · Computer Science 2023-08-24 Tuukka Korhonen

We introduce a decomposition method for the distributed calculation of exact Euclidean Minimum Spanning Trees in high dimensions (where sub-quadratic algorithms are not effective), or more generalized geometric-minimum spanning trees of…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-06-05 Richard Lettich

Knots are commonly represented and manipulated via diagrams, which are decorated planar graphs. When such a knot diagram has low treewidth, parameterized graph algorithms can be leveraged to ensure the fast computation of many invariants…

Computational Geometry · Computer Science 2023-03-16 Corentin Lunel , Arnaud de Mesmay

We define 2-decompositions of ribbon graphs, which generalise 2-sums and tensor products of graphs. We give formulae for the Bollobas-Riordan polynomial of such a 2-decomposition, and derive the classical Brylawski formula for the Tutte…

Combinatorics · Mathematics 2012-03-01 Stephen Huggett , Iain Moffatt

Let $\Delta =\{ \delta_1,\delta_2,...,\delta_m \} $ be a finite set of 2-connected patterns, i.e. graphs up to vertex relabelling. We study the generating function $D_{\Delta }(z,u_1,u_2,...,u_m),$ which counts polygon dissections and marks…

Combinatorics · Mathematics 2018-08-29 Vasiliki Velona

We present a distributed anytime algorithm for performing MAP inference in graphical models. The problem is formulated as a linear programming relaxation over the edges of a graph. The resulting program has a constraint structure that…

Artificial Intelligence · Computer Science 2012-02-20 Joop van de Ven , Fabio Ramos

The Tutte polynomial of a graph, or equivalently the $q$-state Potts model partition function, is a two-variable polynomial graph invariant of considerable importance in both combinatorics and statistical physics. The computation of this…

Combinatorics · Mathematics 2014-10-31 Hanlin Chen , Yuanhua Liao , Hanyuan Deng

In this survey of graph polynomials, we emphasize the Tutte polynomial and a selection of closely related graph polynomials. We explore some of the Tutte polynomial's many properties and applications and we use the Tutte polynomial to…

Combinatorics · Mathematics 2008-06-28 Joanna Ellis-Monaghan , Criel Merino

We study symmetric tensor decompositions, i.e. decompositions of the input symmetric tensor T of order 3 as sum of r 3rd-order tensor powers of u_i where u_i are vectors in \C^n. In order to obtain efficient decomposition algorithms, it is…

Data Structures and Algorithms · Computer Science 2025-03-12 Pascal Koiran , Subhayan Saha

A new general decomposition theory inspired from modular graph decomposition is presented. This helps unifying modular decomposition on different structures, including (but not restricted to) graphs. Moreover, even in the case of graphs,…

Data Structures and Algorithms · Computer Science 2007-11-20 Binh-Minh Bui-Xuan , Michel Habib , Vincent Limouzy , Fabien De Montgolfier

An independent set in a graph $G$ is a set of pairwise non-adjacent vertices. A tree decomposition of $G$ is a pair $(T, \chi)$ where $T$ is a tree and $\chi : V(T) \rightarrow 2^{V(G)}$ is a function satisfying the following two axioms:…

Combinatorics · Mathematics 2026-05-07 Maria Chudnovsky , Ajaykrishnan E S , Daniel Lokshtanov

Finding dense components in graphs is of great importance in analyzing the structure of networks. Popular and computationally feasible frameworks for discovering dense subgraphs are core and truss decompositions. Recently, Sariyuce et al.…

Social and Information Networks · Computer Science 2021-11-05 Fatemeh Esfahani , Venkatesh Srinivasan , Alex Thomo , Kui Wu

The Tutte polynomial of a graph is a 2-variable polynomial which is quite important in both combinatorics and statistical physics. It contains various numerical invariants and polynomial invariants, such as the number of spanning trees, the…

Mathematical Physics · Physics 2015-09-18 Junhao Peng , Guoai Xu

We show an algorithm that, given an $n$-vertex graph $G$ and a parameter $k$, in time $2^{O(k \log k)} n^{O(1)}$ finds a tree decomposition of $G$ with the following properties: * every adhesion of the tree decomposition is of size at most…

Data Structures and Algorithms · Computer Science 2020-09-29 Marek Cygan , Paweł Komosa , Daniel Lokshtanov , Michał Pilipczuk , Marcin Pilipczuk , Saket Saurabh , Magnus Wahlström

Tucker decomposition has been widely used in a variety of applications to obtain latent factors of tensor data. In these applications, a common need is to compute Tucker decomposition for a given time range. Furthermore, real-world tensor…

Data Structures and Algorithms · Computer Science 2025-01-14 Ruizhong Qiu , Jun-Gi Jang , Xiao Lin , Lihui Liu , Hanghang Tong

Decomposing a graph into a hierarchical structure via $k$-core analysis is a standard operation in any modern graph-mining toolkit. $k$-core decomposition is a simple and efficient method that allows to analyze a graph beyond its mere…

Data Structures and Algorithms · Computer Science 2020-01-16 Nikolaj Tatti

We continue studying Thomassen's conjecture (every 4-connected line graph has a Hamilton cycle) in the direction of a recently shown equivalence with Jackson's conjecture (every 2-connected claw-free graph has a Tutte cycle), and we extend…

Combinatorics · Mathematics 2025-03-11 Adam Kabela , Zdeněk Ryjáček , Petr Vrána

Expander decompositions form the basis of one of the most flexible paradigms for close-to-linear-time graph algorithms. Length-constrained expander decompositions generalize this paradigm to better work for problems with lengths, distances…

Data Structures and Algorithms · Computer Science 2024-05-16 Bernhard Haeupler , D Ellis Hershkowitz , Zihan Tan

We describe a new sampling-based method to determine cuts in an undirected graph. For a graph (V, E), its cycle space is the family of all subsets of E that have even degree at each vertex. We prove that with high probability, sampling the…

Distributed, Parallel, and Cluster Computing · Computer Science 2010-07-22 David Pritchard , Ramakrishna Thurimella