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We propose a new family of combinatorial inference problems for graphical models. Unlike classical statistical inference where the main interest is point estimation or parameter testing, combinatorial inference aims at testing the global…

Statistics Theory · Mathematics 2018-02-14 Matey Neykov , Junwei Lu , Han Liu

Many scientific datasets are of high dimension, and the analysis usually requires visual manipulation by retaining the most important structures of data. Principal curve is a widely used approach for this purpose. However, many existing…

Artificial Intelligence · Computer Science 2016-01-19 Qi Mao , Li Wang , Ivor W. Tsang , Yijun Sun

Machine learning provides a valuable tool for analyzing high-dimensional functional neuroimaging data, and is proving effective in predicting various neurological conditions, psychiatric disorders, and cognitive patterns. In functional…

Machine Learning · Computer Science 2024-11-25 Anwar Said , Roza G. Bayrak , Tyler Derr , Mudassir Shabbir , Daniel Moyer , Catie Chang , Xenofon Koutsoukos

The rise of Artificial Intelligence (AI) recently empowered researchers to investigate hard mathematical problems which eluded traditional approaches for decades. Yet, the use of AI in Universal Algebra (UA) -- one of the fields laying the…

The exploration of Graph Neural Networks (GNNs) for processing graph-structured data has expanded, particularly their potential for causal analysis due to their universal approximation capabilities. Anticipated to significantly enhance…

Machine Learning · Computer Science 2024-01-30 Simi Job , Xiaohui Tao , Taotao Cai , Lin Li , Haoran Xie , Jianming Yong

Many real-world phenomena are naturally modeled by graphs and networks. However, classical graph models are often limited to pairwise interactions and may not adequately capture the richer structures that arise in practice. Higher-order…

Social and Information Networks · Computer Science 2026-05-18 Takaaki Fujita , Florentin Smarandache

Recent advances in the integration of deep learning with automated theorem proving have centered around the representation of logical formulae as inputs to deep learning systems. In particular, there has been a growing interest in adapting…

Artificial Intelligence · Computer Science 2020-06-08 Maxwell Crouse , Ibrahim Abdelaziz , Cristina Cornelio , Veronika Thost , Lingfei Wu , Kenneth Forbus , Achille Fokoue

Given the increase of publications, search for relevant papers becomes tedious. In particular, search across disciplines or schools of thinking is not supported. This is mainly due to the retrieval with keyword queries: technical terms…

Information Retrieval · Computer Science 2022-09-02 Lukas Pfahler , Katharina Morik

Graph neural networks are becoming increasingly popular in the field of machine learning due to their unique ability to process data structured in graphs. They have also been applied in safety-critical environments where perturbations…

Machine Learning · Computer Science 2025-04-17 Tobias Ladner , Michael Eichelbeck , Matthias Althoff

The Graph Brain Project is an experiment in how the use of automated mathematical discovery software, databases, large collaboration, and systematic investigation provide a model for how mathematical research might proceed in the future.…

Artificial Intelligence · Computer Science 2018-01-08 N. Bushaw , C. E. Larson , N. Van Cleemput

In recent years, it has become common practice in neuroscience to use networks to summarize relational information in a set of measurements, typically assumed to be reflective of either functional or structural relationships between regions…

Applications · Statistics 2017-03-20 Cedric E. Ginestet , Jun Li , Prakash Balachandran , Steven Rosenberg , Eric D. Kolaczyk

Graph-structured data arise naturally in many different application domains. By representing data as graphs, we can capture entities (i.e., nodes) as well as their relationships (i.e., edges) with each other. Many useful insights can be…

Artificial Intelligence · Computer Science 2018-07-24 John Boaz Lee , Ryan A. Rossi , Sungchul Kim , Nesreen K. Ahmed , Eunyee Koh

We propose a new framework for the recognition of online handwritten graphics. Three main features of the framework are its ability to treat symbol and structural level information in an integrated way, its flexibility with respect to…

Computer Vision and Pattern Recognition · Computer Science 2017-09-20 Frank Julca-Aguilar , Harold Mouchère , Christian Viard-Gaudin , Nina S. T. Hirata

We develop a general approach to distill symbolic representations of a learned deep model by introducing strong inductive biases. We focus on Graph Neural Networks (GNNs). The technique works as follows: we first encourage sparse latent…

Machine Learning · Computer Science 2020-11-19 Miles Cranmer , Alvaro Sanchez-Gonzalez , Peter Battaglia , Rui Xu , Kyle Cranmer , David Spergel , Shirley Ho

This study proposed a knowledge graph entity extraction and relationship reasoning algorithm based on a graph neural network, using a graph convolutional network and graph attention network to model the complex structure in the knowledge…

Computation and Language · Computer Science 2024-11-26 Junliang Du , Guiran Liu , Jia Gao , Xiaoxuan Liao , Jiacheng Hu , Linxiao Wu

Humans excel at solving novel reasoning problems from minimal exposure, guided by inductive biases, assumptions about which entities and relationships matter. Yet the computational form of these biases and their neural implementation remain…

Neurons and Cognition · Quantitative Biology 2025-12-22 Quan Do , Caroline Ahn , Leah Bakst , Michael Pascale , Joseph T. McGuire , Chantal E. Stern , Michael E. Hasselmo

A large number of real-world networks include multiple types of nodes and edges. Graph Neural Network (GNN) emerged as a deep learning framework to generate node and graph embeddings for downstream machine learning tasks. However, popular…

Machine Learning · Computer Science 2024-11-26 Ziynet Nesibe Kesimoglu , Serdar Bozdag

Graphs have a superior ability to represent relational data, like chemical compounds, proteins, and social networks. Hence, graph-level learning, which takes a set of graphs as input, has been applied to many tasks including comparison,…

Machine Learning · Computer Science 2023-05-26 Zhenyu Yang , Ge Zhang , Jia Wu , Jian Yang , Quan Z. Sheng , Shan Xue , Chuan Zhou , Charu Aggarwal , Hao Peng , Wenbin Hu , Edwin Hancock , Pietro Liò

Graph neural networks trained to predict observable dynamics can be used to decompose the temporal activity of complex heterogeneous systems into simple, interpretable representations. Here we apply this framework to simulated neural…

Neurons and Cognition · Quantitative Biology 2026-02-17 Cédric Allier , Larissa Heinrich , Magdalena Schneider , Stephan Saalfeld

Neural-symbolic computing has now become the subject of interest of both academic and industry research laboratories. Graph Neural Networks (GNN) have been widely used in relational and symbolic domains, with widespread application of GNNs…

Artificial Intelligence · Computer Science 2021-06-15 Luis C. Lamb , Artur Garcez , Marco Gori , Marcelo Prates , Pedro Avelar , Moshe Vardi