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Quantitative Systems Pharmacology (QSP) modeling is essential for drug development but it requires significant time investment that limits the throughput of domain experts. We present \textbf{GRASP} -- a multi-agent, graph-reasoning…

Machine Learning · Computer Science 2025-12-08 Omid Bazgir , Vineeth Manthapuri , Ilia Rattsev , Mohammad Jafarnejad

We propose a novel iterative method to adapt a a graph to d-dimensional image data. The method drives the nodes of the graph towards image features. The adaptation process naturally lends itself to a measure of feature saliency which can…

Computer Vision and Pattern Recognition · Computer Science 2019-09-06 Alberto Gomez , Veronika A. Zimmer , Bishesh Khanal , Nicolas Toussaint , Julia A. Schnabel

Graphs are mathematical tools that can be used to represent complex real-world interconnected systems, such as financial markets and social networks. Hence, machine learning (ML) over graphs has attracted significant attention recently.…

Machine Learning · Computer Science 2023-10-24 O. Deniz Kose , Yanning Shen , Gonzalo Mateos

Reeb spaces of continuous real-valued functions on topological spaces are fundamental and strong tools in investigating the spaces. The Reeb space is the natural quotient space of the space of the domain represented by connected components…

Algebraic Geometry · Mathematics 2026-05-13 Naoki Kitazawa

Graph construction is a crucial step in spectral clustering (SC) and graph-based semi-supervised learning (SSL). Spectral methods applied on standard graphs such as full-RBF, $\epsilon$-graphs and $k$-NN graphs can lead to poor performance…

Machine Learning · Statistics 2012-05-09 Jing Qian , Venkatesh Saligrama , Manqi Zhao

Graph Neural Networks (GNNs) have emerged as a notorious alternative to address learning problems dealing with non-Euclidean datasets. However, although most works assume that the graph is perfectly known, the observed topology is prone to…

Machine Learning · Computer Science 2023-12-12 Victor M. Tenorio , Samuel Rey , Antonio G. Marques

In the Any-Angle Pathfinding problem, the goal is to find the shortest path between a pair of vertices on a uniform square grid, that is not constrained to any fixed number of possible directions over the grid. Visibility Graphs are a known…

Computational Geometry · Computer Science 2017-02-07 Shunhao Oh , Hon Wai Leong

Graph filtering is the cornerstone operation in graph signal processing (GSP). Thus, understanding it is key in developing potent GSP methods. Graph filters are local and distributed linear operations, whose output depends only on the local…

Signal Processing · Electrical Eng. & Systems 2022-12-21 T. Mitchell Roddenberry , Fernando Gama , Richard G. Baraniuk , Santiago Segarra

Semi-structured knowledge bases (SKBs) embed textual documents in a typed graph of entities and relations, and underpin applications such as product search, academic paper search, and precision-medicine inquiries. Existing hybrid retrieval…

Information Retrieval · Computer Science 2026-05-29 Yicheng Tao , Yiqun Wang , Xiangchen Song , Xin Luo , Kai Liu , Jie Liu

A fundamental challenge to sensory processing tasks in perception and robotics is the problem of obtaining data associations across views. We present a robust solution for ascertaining potentially dense surface patch (superpixel)…

Computer Vision and Pattern Recognition · Computer Science 2014-11-18 Rahul Sawhney , Fuxin Li , Henrik I. Christensen

Shape optimisation of thin-shell structures requires a flexible, differentiable geometric representation suitable for gradient-based optimisation. We propose a neural parametric representation (NRep) for the shell mid-surface based on a…

Numerical Analysis · Mathematics 2026-04-09 Xiao Xiao , Fehmi Cirak

With the popularization of Topological Data Analysis, the Reeb graph has found new applications as a summarization technique in the analysis and visualization of large and complex data, whose usefulness extends beyond just the graph itself.…

Computational Geometry · Computer Science 2020-01-14 Junyi Tu , Mustafa Hajij , Paul Rosen

Node-link diagrams are widely used to visualize graphs. Most graph layout algorithms only use graph topology for aesthetic goals (e.g., minimize node occlusions and edge crossings) or use node attributes for exploration goals (e.g.,…

Data Structures and Algorithms · Computer Science 2023-01-20 Leixian Shen , Zhiwei Tai , Enya Shen , Jianmin Wang

Bayesian optimization (BO) is a powerful framework for optimizing expensive black-box objectives, yet extending it to graph-structured domains remains challenging due to the discrete and combinatorial nature of graphs. Existing approaches…

Machine Learning · Computer Science 2025-11-12 Shu Hong , Yongsheng Mei , Mahdi Imani , Tian Lan

Learning efficient graph representation is the key to favorably addressing downstream tasks on graphs, such as node or graph property prediction. Given the non-Euclidean structural property of graphs, preserving the original graph data's…

Machine Learning · Computer Science 2022-05-31 Bingxin Zhou , Xuebin Zheng , Yu Guang Wang , Ming Li , Junbin Gao

Given a graph $G$ cellularly embedded on a surface $\Sigma$ of genus $g$, a cut graph is a subgraph of $G$ such that cutting $\Sigma$ along $G$ yields a topological disk. We provide a fixed parameter tractable approximation scheme for the…

Data Structures and Algorithms · Computer Science 2015-07-08 Vincent Cohen-Addad , Arnaud de Mesmay

Sampling is a widely used graph reduction technique to accelerate graph computations and simplify graph visualizations. By comprehensively analyzing the literature on graph sampling, we assume that existing algorithms cannot effectively…

Social and Information Networks · Computer Science 2020-09-17 Ying Zhao , Haojin Jiang , Qi'an Chen , Yaqi Qin , Huixuan Xie , Yitao Wu Shixia Liu , Zhiguang Zhou , Jiazhi Xia , Fangfang Zhou

In this paper, we introduce a Grasp Manifold Estimator (GraspME) to detect grasp affordances for objects directly in 2D camera images. To perform manipulation tasks autonomously it is crucial for robots to have such graspability models of…

Robotics · Computer Science 2021-07-06 Janik Hager , Ruben Bauer , Marc Toussaint , Jim Mainprice

The construction of a meaningful graph topology plays a crucial role in the effective representation, processing, analysis and visualization of structured data. When a natural choice of the graph is not readily available from the data sets,…

Machine Learning · Computer Science 2019-05-22 Xiaowen Dong , Dorina Thanou , Michael Rabbat , Pascal Frossard

Graph signal processing (GSP) provides a powerful framework for analyzing signals arising in a variety of domains. In many applications of GSP, multiple network structures are available, each of which captures different aspects of the same…

Machine Learning · Statistics 2021-11-03 Michael Weylandt , George Michailidis , T. Mitchell Roddenberry