English
Related papers

Related papers: Text Indexing and Pattern Matching with Ephemeral …

200 papers

The palindrome pattern matching (pal-matching) is a kind of generalized pattern matching, in which two strings $x$ and $y$ of same length are considered to match (pal-match) if they have the same palindromic structures, i.e., for any…

Data Structures and Algorithms · Computer Science 2023-04-17 Shinya Nagashita , Tomohiro I

Consider an input text string T[1,N] drawn from an unbounded alphabet. We study partial computation in suffix-based problems for Data Compression and Text Indexing such as (I) retrieve any segment of K<=N consecutive symbols from the…

Data Structures and Algorithms · Computer Science 2011-10-18 Gianni Franceschini , Roberto Grossi , S. Muthukrishnan

Motivated by the imminent growth of massive, highly redundant genomic databases, we study the problem of compressing a string database while simultaneously supporting fast random access, substring extraction and pattern matching to the…

Data Structures and Algorithms · Computer Science 2012-11-01 Travis Gagie , Paweł Gawrychowski , Christopher Hoobin , Simon J. Puglisi

Important papers have appeared recently on the problem of indexing binary strings for jumbled pattern matching, and further lowering the time bounds in terms of the input size would now be a breakthrough with broad implications. We can…

Data Structures and Algorithms · Computer Science 2017-02-15 Luís Cunha , Simone Dantas , Travis Gagie , Roland Wittler , Luis Kowada , Jens Stoye

We study the internal dictionary matching (IDM) problem where a dictionary $\mathcal{D}$ containing $d$ substrings of a text $T$ is given, and each query concerns the occurrences of patterns in $\mathcal{D}$ in another substring of $T$. We…

Data Structures and Algorithms · Computer Science 2025-05-16 Jingbang Chen , Jiangqi Dai , Qiuyang Mang , Qingyu Shi , Tingqiang Xu

Park et al. [TCS 2020] observed that the similarity between two (numerical) strings can be captured by the Cartesian trees: The Cartesian tree of a string is a binary tree recursively constructed by picking up the smallest value of the…

Data Structures and Algorithms · Computer Science 2022-04-18 Tsubasa Oizumi , Takeshi Kai , Takuya Mieno , Shunsuke Inenaga , Hiroki Arimura

Neural sequence-to-sequence models are finding increasing use in editing of documents, for example in correcting a text document or repairing source code. In this paper, we argue that common seq2seq models (with a facility to copy single…

Machine Learning · Computer Science 2020-12-15 Sheena Panthaplackel , Miltiadis Allamanis , Marc Brockschmidt

Given a string $S$ over an alphabet $\Sigma$, the 'string indexing problem' is to preprocess $S$ to subsequently support efficient pattern matching queries, i.e., given a pattern string $P$ report all the occurrences of $P$ in $S$. In this…

Data Structures and Algorithms · Computer Science 2023-01-24 Philip Bille , Johannes Fischer , Inge Li Gørtz , Max Rishøj Pedersen , Tord Joakim Stordalen

Inverse text normalization (ITN) is an essential post-processing step in automatic speech recognition (ASR). It converts numbers, dates, abbreviations, and other semiotic classes from the spoken form generated by ASR to their written forms.…

Computation and Language · Computer Science 2022-08-02 Alexandra Antonova , Evelina Bakhturina , Boris Ginsburg

Let S be a finite, ordered alphabet, and let x = x_1 x_2 ... x_n be a string over S. A "secondary index" for x answers alphabet range queries of the form: Given a range [a_l,a_r] over S, return the set I_{[a_l;a_r]} = {i |x_i \in [a_l;…

Databases · Computer Science 2008-11-19 Rasmus Pagh , S. Srinivasa Rao

As an essential operation in data cleaning, the similarity join has attracted considerable attention from the database community. In this paper, we study string similarity joins with edit-distance constraints, which find similar string…

Databases · Computer Science 2011-12-01 Guoliang Li , Dong Deng , Jiannan Wang , Jianhua Feng

This paper presents a general technique for optimally transforming any dynamic data structure that operates on atomic and indivisible keys by constant-time comparisons, into a data structure that handles unbounded-length keys whose…

Data Structures and Algorithms · Computer Science 2013-06-04 Amihood Amir , Gianni Franceschini , Roberto Grossi , Tsvi Kopelowitz , Moshe Lewenstein , Noa Lewenstein

Approximate string matching is the problem of finding all factors of a text t of length n that are at a distance at most k from a pattern x of length m. Approximate circular string matching is the problem of finding all factors of t that…

Data Structures and Algorithms · Computer Science 2016-04-26 Carl Barton , Costas S. Iliopoulos , Solon P. Pissis

Cartesian tree matching is a form of generalized pattern matching where a substring of the text matches with the pattern if they share the same Cartesian tree. This form of matching finds application for time series of stock prices and can…

Data Structures and Algorithms · Computer Science 2024-11-20 Eric M. Osterkamp , Dominik Köppl

We study strategies of approximate pattern matching that exploit bidirectional text indexes, extending and generalizing ideas of Lam et al. We introduce a formalism, called search schemes, to specify search strategies of this type, then…

Data Structures and Algorithms · Computer Science 2015-09-08 Gregory Kucherov , Kamil Salikhov , Dekel Tsur

Efficient text indexing data structures have enabled large-scale genomic sequence analysis and are used to help solve problems ranging from assembly to read mapping. However, these data structures typically assume that the underlying…

Genomics · Quantitative Biology 2016-04-13 Nitish Gupta , Komal Sanjeev , Tim Wall , Carl Kingsford , Rob Patro

Traditional sentence embedding models encode sentences into vector representations to capture useful properties such as the semantic similarity between sentences. However, in addition to similarity, sentence semantics can also be…

Computation and Language · Computer Science 2023-11-07 James Y. Huang , Wenlin Yao , Kaiqiang Song , Hongming Zhang , Muhao Chen , Dong Yu

The standard operational semantics of the sequential composition operator gives rise to unbounded branching and forgetfulness when transparent process expressions are put in sequence. Due to transparency, the correspondence between…

Logic in Computer Science · Computer Science 2017-09-11 Jos Baeten , Bas Luttik , Fei Yang

We consider compact representations of collections of similar strings that support random access queries. The collection of strings is given by a rooted tree where edges are labeled by an edit operation (inserting, deleting, or replacing a…

Data Structures and Algorithms · Computer Science 2021-02-12 Philip Bille , Inge Li Gørtz

The dictionary matching problem is to locate occurrences of any pattern among a set of patterns in a given text. Massive data sets abound and at the same time, there are many settings in which working space is extremely limited. We…

Data Structures and Algorithms · Computer Science 2013-01-29 Shoshana Marcus Dina Sokol