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Advances in large language models (LLMs) have recently opened new and promising avenues for small-molecule drug discovery. Yet existing LLM-based approaches for molecular generation often suffer from high rates of invalid and low-quality…

Machine Learning · Computer Science 2026-05-15 Andrew Y. Zhou , Sharvaree Vadgama , Sumanth Varambally , Peter Eckmann , Michael K. Gilson , Rose Yu

Large language models (LLMs) increasingly rely on chain-of-thought (CoT) reasoning to solve complex tasks. Yet ensuring that the reasoning trace both contributes to and faithfully reflects the processes underlying the model's final answer,…

Computation and Language · Computer Science 2026-04-20 Max Henning Höth , Kristian Kersting , Björn Deiseroth , Letitia Parcalabescu

Strong Artificial Intelligence (Strong AI) or Artificial General Intelligence (AGI) with abstract reasoning ability is the goal of next-generation AI. Recent advancements in Large Language Models (LLMs), along with the emerging field of…

Computation and Language · Computer Science 2024-01-19 Yiqi Wang , Wentao Chen , Xiaotian Han , Xudong Lin , Haiteng Zhao , Yongfei Liu , Bohan Zhai , Jianbo Yuan , Quanzeng You , Hongxia Yang

Recently, Multimodal Large Language Models (MLLMs) have achieved significant success across multiple disciplines due to their exceptional instruction-following capabilities and extensive world knowledge. However, whether these MLLMs possess…

Computer Vision and Pattern Recognition · Computer Science 2025-04-18 Yian Li , Wentao Tian , Yang Jiao , Jingjing Chen , Tianwen Qian , Bin Zhu , Na Zhao , Yu-Gang Jiang

We present a modular framework powered by large language models (LLMs) that automates and streamlines key tasks across the early-stage computational drug discovery pipeline. By combining LLM reasoning with domain-specific tools, the…

Understanding the internal mechanisms of large audio-language models (LALMs) is crucial for interpreting their behavior and improving performance. This work presents the first in-depth analysis of how LALMs internally perceive and recognize…

Computation and Language · Computer Science 2025-08-26 Chih-Kai Yang , Neo Ho , Yi-Jyun Lee , Hung-yi Lee

Protein language models (PLMs) have advanced computational protein science through large-scale pretraining and scalable architectures. In parallel, reinforcement learning (RL) has broadened exploration and enabled precise multi-objective…

Deep Reinforcement Learning (RL) is remarkably effective in addressing sequential resource allocation problems in domains such as healthcare, public policy, and resource management. However, deep RL policies often lack transparency and…

Machine Learning · Computer Science 2025-02-18 Mauricio Tec , Guojun Xiong , Haichuan Wang , Francesca Dominici , Milind Tambe

Reinforcement learning (RL) has demonstrated strong potential in training large language models (LLMs) capable of complex reasoning for real-world problem solving. More recently, RL has been leveraged to create sophisticated LLM-based…

Computation and Language · Computer Science 2025-05-22 Bowen Jin , Jinsung Yoon , Priyanka Kargupta , Sercan O. Arik , Jiawei Han

We introduce Directional Stimulus Prompting, a novel framework for guiding black-box large language models (LLMs) toward specific desired outputs. Instead of directly adjusting LLMs, our method employs a small tunable policy model (e.g.,…

Computation and Language · Computer Science 2023-10-11 Zekun Li , Baolin Peng , Pengcheng He , Michel Galley , Jianfeng Gao , Xifeng Yan

Enhancing the multimodal reasoning capabilities of Multimodal Large Language Models (MLLMs) is a challenging task that has attracted increasing attention in the community. Recently, several studies have applied Reinforcement Learning with…

Machine Learning · Computer Science 2026-03-04 Tong Xiao , Xin Xu , Zhenya Huang , Hongyu Gao , Quan Liu , Qi Liu , Enhong Chen

Large language models (LLMs) have shown impressive capabilities across a wide range of language tasks. However, their reasoning process is primarily guided by statistical patterns in training data, which limits their ability to handle novel…

Artificial Intelligence · Computer Science 2025-08-21 Hong Su

Recently, there has been growing interest in collecting reasoning-intensive pretraining data to improve LLMs' complex reasoning ability. Prior approaches typically rely on supervised classifiers to identify such data, which requires…

Computation and Language · Computer Science 2025-05-13 Kai Hua , Steven Wu , Ge Zhang , Ke Shen

Multimodal representation is crucial for E-commerce tasks such as identical product retrieval. Large representation models (e.g., VLM2Vec) demonstrate strong multimodal understanding capabilities, yet they struggle with fine-grained…

Computation and Language · Computer Science 2026-04-23 Biao Zhang , Lixin Chen , Bin Zhang , Zongwei Wang , Tong Liu , Bo Zheng

Predictive modeling on tabular data is the cornerstone of many real-world applications. Although gradient boosting machines and some recent deep models achieve strong performance on tabular data, they often lack interpretability. On the…

Machine Learning · Computer Science 2025-07-01 Tommy Xu , Zhitian Zhang , Xiangyu Sun , Lauren Kelly Zung , Hossein Hajimirsadeghi , Greg Mori

Standing in 2025, at a critical juncture in the pursuit of Artificial General Intelligence (AGI), reinforcement fine-tuning (RFT) has demonstrated significant potential in enhancing the reasoning capability of large language models (LLMs)…

Computation and Language · Computer Science 2025-05-27 Haoyuan Sun , Jiaqi Wu , Bo Xia , Yifu Luo , Yifei Zhao , Kai Qin , Xufei Lv , Tiantian Zhang , Yongzhe Chang , Xueqian Wang

Scaling model size and training data has led to great advances in the performance of Large Language Models (LLMs). However, the diminishing returns of this approach necessitate alternative methods to improve model capabilities, particularly…

Machine Learning · Computer Science 2025-11-05 Daman Arora , Andrea Zanette

Retrosynthesis planning, essential in organic synthesis and drug discovery, has greatly benefited from recent AI-driven advancements. Nevertheless, existing methods frequently face limitations in both applicability and explainability.…

Computational Engineering, Finance, and Science · Computer Science 2025-07-24 Situo Zhang , Hanqi Li , Lu Chen , Zihan Zhao , Xuanze Lin , Zichen Zhu , Bo Chen , Xin Chen , Kai Yu

The growing disparity between the exponential scaling of computational resources and the finite growth of high-quality text data now constrains conventional scaling approaches for large language models (LLMs). To address this challenge, we…

Contemporary large language models (LLMs), such as GPT-4 and Llama, have harnessed extensive computational power and diverse text corpora to achieve remarkable proficiency in interpreting and generating domain-specific content, including…

Machine Learning · Computer Science 2025-10-07 Tianren Zhang , Dai-Bei Yang