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Composed Image Retrieval (CIR) is the task of retrieving images matching a reference image augmented with a text, where the text describes changes to the reference image in natural language. Traditionally, models designed for CIR have…

Computer Vision and Pattern Recognition · Computer Science 2025-06-16 Yiqun Duan , Sameera Ramasinghe , Stephen Gould , Ajanthan Thalaiyasingam

As gradual typing becomes increasingly popular in languages like Python and TypeScript, there is a growing need to infer type annotations automatically. While type annotations help with tasks like code completion and static error catching,…

Programming Languages · Computer Science 2020-05-06 Jiayi Wei , Maruth Goyal , Greg Durrett , Isil Dillig

Functional MRI (fMRI) and single-cell transcriptomics are pivotal in Alzheimer's disease (AD) research, each providing unique insights into neural function and molecular mechanisms. However, integrating these complementary modalities…

Quantitative Methods · Quantitative Biology 2025-02-06 Yu-An Huang , Yao Hu , Yue-Chao Li , Xiyue Cao , Xinyuan Li , Kay Chen Tan , Zhu-Hong You , Zhi-An Huang

Spike-based temporal messaging enables SNNs to efficiently process both purely temporal and spatio-temporal time-series or event-driven data. Combining SNNs with Gated Recurrent Units (GRUs), a variant of recurrent neural networks, gives…

Machine Learning · Computer Science 2025-10-30 Yesmine Abdennadher , Eleonora Cicciarella , Michele Rossi

Graph Neural Networks (GNNs) are powerful tools for processing relational data but often struggle to generalize to unseen graphs, giving rise to the development of Graph Foundational Models (GFMs). However, current GFMs are challenged by…

Machine Learning · Computer Science 2026-05-25 Weishuo Ma , Yanbo Wang , Xiyuan Wang , Lei Zou , Muhan Zhang

Single-cell RNA sequencing (scRNA-seq) is essential for unraveling cellular heterogeneity and diversity, offering invaluable insights for bioinformatics advancements. Despite its potential, traditional clustering methods in scRNA-seq data…

Machine Learning · Computer Science 2025-10-01 Ping Xu , Zhiyuan Ning , Meng Xiao , Guihai Feng , Xin Li , Yuanchun Zhou , Pengfei Wang

Zero-shot vision-language models (VLMs) have shown promise for chest radiograph classification, but their performance is often limited by confounding label co-occurrence, long-tail class imbalance, and transfer instability under domain…

Machine Learning · Computer Science 2026-04-21 Florian Kittler , Sheethal Bhat , Andreas Maier

Deep graph generative modeling has gained enormous attraction in recent years due to its impressive ability to directly learn the underlying hidden graph distribution. Despite their initial success, these techniques, like much of the…

Machine Learning · Computer Science 2023-12-15 Sahil Manchanda , Shubham Gupta , Sayan Ranu , Srikanta Bedathur

Nucleus instance segmentation from histopathology images suffers from the extremely laborious and expert-dependent annotation of nucleus instances. As a promising solution to this task, annotation-efficient deep learning paradigms have…

Computer Vision and Pattern Recognition · Computer Science 2024-02-29 Yu Ming , Zihao Wu , Jie Yang , Danyi Li , Yuan Gao , Changxin Gao , Gui-Song Xia , Yuanqing Li , Li Liang , Jin-Gang Yu

Contrastive Language-Image Pretraining has demonstrated remarkable zero-shot generalization by aligning visual and textual modalities in a shared embedding space. However, when continuously fine-tuned on diverse tasks, CLIP suffers from…

Machine Learning · Computer Science 2025-07-29 Tiantian Peng , Yuyang Liu , Shuo Yang , Qiuhe Hong , YongHong Tian

Machine learning models -- including prominent zero-shot models -- are often trained on datasets whose labels are only a small proportion of a larger label space. Such spaces are commonly equipped with a metric that relates the labels via…

Machine Learning · Computer Science 2023-11-29 Nicholas Roberts , Xintong Li , Dyah Adila , Sonia Cromp , Tzu-Heng Huang , Jitian Zhao , Frederic Sala

Recent breakthroughs in single-cell technology have ushered in unparalleled opportunities to decode the molecular intricacy of intricate biological systems, especially those linked to diseases unique to humans. However, these progressions…

Genomics · Quantitative Biology 2025-08-26 Huan Zhao , Yiming Liu , Jina Yao , Ling Xiong , Zexin Zhou , Zixing Zhang

Single-cell RNA sequencing (scRNA-seq) provides a high throughput, quantitative and unbiased framework for scientists in many research fields to identify and characterize cell types within heterogeneous cell populations from various…

Quantitative Methods · Quantitative Biology 2022-09-28 Yeganeh Madadi , Aboozar Monavarfeshani , Hao Chen , W. Daniel Stamer , Robert W. Williams , Siamak Yousefi

Identifying cell types and subtypes in routine histopathology is fundamental for understanding disease. Existing tile-based models capture nuclear detail but miss the broader tissue context that influences cell identity. Current human…

Computer Vision and Pattern Recognition · Computer Science 2025-11-20 Yinuo Xu , Yan Cui , Mingyao Li , Zhi Huang

With the development of foundation models such as large language models, zero-shot transfer learning has become increasingly significant. This is highlighted by the generative capabilities of NLP models like GPT-4, and the retrieval-based…

Machine Learning · Computer Science 2024-06-25 Yuhan Li , Peisong Wang , Zhixun Li , Jeffrey Xu Yu , Jia Li

Learning on text-attributed graphs (TAGs), in which nodes are associated with one or more texts, has been the subject of much recent work. However, most approaches tend to make strong assumptions about the downstream task of interest, are…

Computation and Language · Computer Science 2024-07-11 William Brannon , Wonjune Kang , Suyash Fulay , Hang Jiang , Brandon Roy , Deb Roy , Jad Kabbara

Knowing where people look in visualizations is key to effective design. Yet, existing research primarily focuses on free-viewing-based saliency models - although visual attention is inherently task-dependent. Collecting task-relevant…

Human-Computer Interaction · Computer Science 2025-06-09 Minsuk Chang , Yao Wang , Huichen Will Wang , Andreas Bulling , Cindy Xiong Bearfield

Chinese Character Recognition (CCR) is a fundamental technology for intelligent document processing. Unlike Latin characters, Chinese characters exhibit unique spatial structures and compositional rules, allowing for the use of fine-grained…

Computer Vision and Pattern Recognition · Computer Science 2025-06-02 Yinglian Zhu , Haiyang Yu , Qizao Wang , Wei Lu , Xiangyang Xue , Bin Li

Node classification is a fundamental problem in information retrieval with many real-world applications, such as community detection in social networks, grouping articles published online and product categorization in e-commerce. Zero-shot…

Machine Learning · Computer Science 2026-01-08 Sethupathy Parameswaran , Suresh Sundaram , Yuan Fang

Security knowledge graphs can provide computable external memory for security agents, but constructing them from long-form cyber threat intelligence (CTI) remains difficult: LLMs often lack grounded security-domain knowledge, and end-to-end…

Artificial Intelligence · Computer Science 2026-05-19 Liangyi Huang , Zichen Liu , Fei Shao , Shang Ma , Mengshi Zhang , Zihao Chen , Yanfang Ye , Xusheng Xiao