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Given a signed permutation on $n$ elements, we need to sort it with the fewest reversals. This is a fundamental algorithmic problem motivated by applications in comparative genomics, as it allows to accurately model rearrangements in small…

Data Structures and Algorithms · Computer Science 2023-08-31 Bartłomiej Dudek , Paweł Gawrychowski , Tatiana Starikovskaya

We consider the problem of minimizing the total processing time of tardy jobs on a single machine. This is a classical scheduling problem, first considered by [Lawler and Moore 1969], that also generalizes the Subset Sum problem. Recently,…

Data Structures and Algorithms · Computer Science 2023-01-18 Baruch Schieber , Pranav Sitaraman

In the sliding window model, we are required to maintain the target statistics over the most recent $n$ elements of a data stream, which is captured by a window of size $n$ sliding over the data stream. Exact computation usually requires…

Data Structures and Algorithms · Computer Science 2026-04-28 Ryo Suzuki , Yutaro Yamaguchi

We develop new approximation algorithms for classical graph and set problems in the RAM model under space constraints. As one of our main results, we devise an algorithm for d-Hitting Set that runs in time n^{O(d^2 + d/\epsilon})}, uses…

Data Structures and Algorithms · Computer Science 2021-02-23 Arindam Biswas , Venkatesh Raman , Saket Saurabh

This paper describes an algorithm (thus far referred to as the "Dragonfly Algorithm") by which the subset-sum problem can be solved in $O(n^{11}\log(n))$ time complexity. The paper will first detail the generalized "product-derivative"…

Computational Complexity · Computer Science 2022-12-08 Rion Tolchin

Finding the length of the longest increasing subsequence (LIS) is a classic algorithmic problem. Let $n$ denote the size of the array. Simple $O(n\log n)$ algorithms are known for this problem. We develop a polylogarithmic time randomized…

Data Structures and Algorithms · Computer Science 2013-08-06 M. Saks , C. Seshadhri

The classic algorithm [Papadimitriou, J.ACM '81] for IPs has a running time $n^{O(m)}(m\cdot\max\{\Delta,\|\textbf{b}\|_{\infty}\})^{O(m^2)}$, where $m$ is the number of constraints, $n$ is the number of variables, and $\Delta$ and…

Optimization and Control · Mathematics 2026-01-01 Hauke Brinkop , Hua Chen , Lin Chen , Klaus Jansen , Guochuan Zhang

In this note, we develop fast and deterministic dimensionality reduction techniques for a family of subspace approximation problems. Let $P\subset \mathbbm{R}^N$ be a given set of $M$ points. The techniques developed herein find an $O(n…

Computational Geometry · Computer Science 2013-12-06 Mark Iwen , Felix Krahmer

Nishimoto and Tabei [CPM, 2021] proposed r-enum, an algorithm to enumerate various characteristic substrings, including maximal repeats, in a string $T$ of length $n$ in $O(r)$ words of compressed working space, where $r \le n$ is the…

Data Structures and Algorithms · Computer Science 2026-01-27 Kotaro Kimura , Tomohiro I

We consider the Subset Sum Ratio Problem ($SSR$), in which given a set of integers the goal is to find two subsets such that the ratio of their sums is as close to~1 as possible, and introduce a family of variations that capture additional…

Data Structures and Algorithms · Computer Science 2020-03-17 Nikolaos Melissinos , Aris Pagourtzis , Theofilos Triommatis

The starting point of this paper is the problem of scheduling $n$ jobs with processing times and due dates on a single machine so as to minimize the total processing time of tardy jobs, i.e., $1||\sum p_j U_j$. This problem was identified…

Data Structures and Algorithms · Computer Science 2022-11-11 Kim-Manuel Klein , Adam Polak , Lars Rohwedder

In this paper, we develop new algorithms for the basic RNA folding problem. Given an RNA sequence that contains $n$ nucleotides, the goal of the problem is to compute a pseudoknot-free secondary structure that maximizes the number of base…

Data Structures and Algorithms · Computer Science 2015-03-23 Yinglei Song

We present a quantum algorithm to solve dynamic programming problems with convex value functions. For linear discrete-time systems with a $d$-dimensional state space of size $N$, the proposed algorithm outputs a quantum-mechanical…

Quantum Physics · Physics 2021-03-18 David Sutter , Giacomo Nannicini , Tobias Sutter , Stefan Woerner

Many streaming algorithms provide only a high-probability relative approximation. These two relaxations, of allowing approximation and randomization, seem necessary -- for many streaming problems, both relaxations must be employed…

Data Structures and Algorithms · Computer Science 2023-05-16 Vladimir Braverman , Robert Krauthgamer , Aditya Krishnan , Shay Sapir

We present an algorithm that given a linear program with $n$ variables, $m$ constraints, and constraint matrix $A$, computes an $\epsilon$-approximate solution in $\tilde{O}(\sqrt{rank(A)}\log(1/\epsilon))$ iterations with high probability.…

Data Structures and Algorithms · Computer Science 2020-09-02 Yin Tat Lee , Aaron Sidford

We study approximation algorithms for the following three string measures that are widely used in practice: edit distance (ED), longest common subsequence (LCS), and longest increasing sequence (LIS). All three problems can be solved…

Data Structures and Algorithms · Computer Science 2020-07-28 Kuan Cheng , Zhengzhong Jin , Xin Li , Yu Zheng

A palindromic substring $T[i.. j]$ of a string $T$ is said to be a shortest unique palindromic substring (SUPS) in $T$ for an interval $[p, q]$ if $T[i.. j]$ is a shortest palindromic substring such that $T[i.. j]$ occurs only once in $T$,…

Data Structures and Algorithms · Computer Science 2023-08-30 Takuya Mieno , Mitsuru Funakoshi

The $k$-subset sum problem over finite fields is a classical NP-complete problem.Motivated by coding theory applications, a more complex problem is the higher $m$-th moment $k$-subset sum problem over finite fields. We show that there is a…

Number Theory · Mathematics 2019-10-22 Tim Lai , Alicia Marino , Angela Robinson , Daqing Wan

We give a sublinear quantum algorithm for the longest common substring (LCS) problem on the run-length encoded (RLE) inputs, under the assumption that the prefix-sums of the runs are given. Our algorithm costs $\tilde{O}(n^{5/6})\cdot…

Quantum Physics · Physics 2023-10-03 Tzu-Ching Lee , Han-Hsuan Lin

The field of fine-grained complexity aims at proving conditional lower bounds on the time complexity of computational problems. One of the most popular assumptions, Strong Exponential Time Hypothesis (SETH), implies that SAT cannot be…

Computational Complexity · Computer Science 2023-07-24 Tatiana Belova , Alexander S. Kulikov , Ivan Mihajlin , Olga Ratseeva , Grigory Reznikov , Denil Sharipov