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Heterogeneous, interconnected, systems-level, molecular data have become increasingly available and key in precision medicine. We need to utilize them to better stratify patients into risk groups, discover new biomarkers and targets,…

Other Quantitative Biology · Quantitative Biology 2024-05-17 Natasa Przulj , Noel Malod-Dognin

The orbital debris problem presents an opportunity for inter-agency and international cooperation toward the mutually beneficial goals of debris prevention, mitigation, remediation, and improved space situational awareness (SSA). Achieving…

Artificial Intelligence · Computer Science 2021-12-08 Robert J. Rovetto

Deep learning models in computational pathology often fail to generalize across cohorts and institutions due to domain shift. Existing approaches either fail to leverage unlabeled data from the target domain or rely on image-to-image…

Computer Vision and Pattern Recognition · Computer Science 2026-01-27 Tengyue Zhang , Ruiwen Ding , Luoting Zhuang , Yuxiao Wu , Erika F. Rodriguez , William Hsu

Domain adaptive person re-identification (re-ID) is a challenging task due to the large discrepancy between the source domain and the target domain. To reduce the domain discrepancy, existing methods mainly attempt to generate pseudo labels…

Computer Vision and Pattern Recognition · Computer Science 2020-09-15 Junhui Yin , Jiayan Qiu , Siqing Zhang , Zhanyu Ma , Jun Guo

Ontology Alignment is an important research problem applied to various fields such as data integration, data transfer, data preparation, etc. State-of-the-art (SOTA) Ontology Alignment systems typically use naive domain-dependent approaches…

Computation and Language · Computer Science 2021-12-20 Vivek Iyer , Arvind Agarwal , Harshit Kumar

As the number of scientific publications and preprints is growing exponentially, several attempts have been made to navigate this complex and increasingly detailed landscape. These have almost exclusively taken unsupervised approaches that…

In today's large enterprises there is a significant increasing trend in the amount of data that has to be stored and processed. To complicate this scenario the complexity of organizing and managing a large collection of data, structured…

Artificial Intelligence · Computer Science 2018-04-05 Manuel Namici

Neuromorphic systems open up opportunities to enlarge the explorative space for computational research. However, it is often challenging to unite efficiency and usability. This work presents the software aspects of this endeavor for the…

Researchers across nearly every discipline seek to leverage ontologies for knowledge discovery and computational tasks; yet, the number of machine readable materials science ontologies is limited. The work presented in this paper explores…

Digital Libraries · Computer Science 2022-11-21 Jane Greenberg , Scott McClellan , Xintong Zhao , Elijah J Kellner , David Venator , Haoran Zhao , Jiacheng Shen , Xiaohua Hu , Yuan An

Complex natural or engineered systems comprise multiple characteristic scales, multiple spatiotemporal domains, and even multiple physical closure laws. To address such challenges, we introduce an interface learning paradigm and put forth a…

Computational Physics · Physics 2020-11-18 Shady E. Ahmed , Omer San , Kursat Kara , Rami Younis , Adil Rasheed

Objects with complex structures pose significant challenges to existing instance segmentation methods that rely on boundary or affinity maps, which are vulnerable to small errors around contacting pixels that cause noticeable connectivity…

Computer Vision and Pattern Recognition · Computer Science 2023-10-10 Zudi Lin , Donglai Wei , Aarush Gupta , Xingyu Liu , Deqing Sun , Hanspeter Pfister

Surgical intelligence has the potential to improve the safety and consistency of surgical care, yet most existing surgical AI frameworks remain task-specific and struggle to generalize across procedures and institutions. Although multimodal…

Ontologies provide features like a common vocabulary, reusability, machine-readable content, and also allows for semantic search, facilitate agent interaction and ordering & structuring of knowledge for the Semantic Web (Web 3.0)…

Information Retrieval · Computer Science 2017-09-08 Monika Rani , Amit Kumar Dhar , O. P. Vyas

The use of machine learning (ML) techniques in the biomedical field has become increasingly important, particularly with the large amounts of data generated by the aftermath of the COVID-19 pandemic. However, due to the complex nature of…

Machine Learning · Computer Science 2023-03-17 Anthony Onoja , Francesco Raimondi

In recent years, following FAIR and open data principles, the number of available big data including biomedical data has been increased exponentially. In order to extract knowledge, these data should be curated, integrated, and semantically…

Databases · Computer Science 2018-11-06 Samaneh Jozashoori , Tatiana Novikova , Maria-Esther Vidal

Reproducibility, traceability, and transparency in testing cyber-physical energy systems are crucial for scientific advancement and cross-laboratory collaboration. Current experimentation and test documentation practices lack formal…

Systems and Control · Electrical Eng. & Systems 2026-04-22 Kai Heussen , Jawad Kazmi , Narges Mehran , Artjoms Obushevs , Terence O'Donnell , Thomas I. Strasser

While dense biomedical embeddings achieve strong performance, their black-box nature limits their utility in clinical decision-making. Recent question-based interpretable embeddings represent text as binary answers to natural-language…

Computation and Language · Computer Science 2026-03-04 Yixuan Tang , Zhenghong Lin , Yandong Sun , Wynne Hsu , Mong Li Lee , Anthony K. H. Tung

Biomedical discovery often requires connecting broad biomedical knowledge with specific experimental or clinical data. Background knowledge suggests relevant mechanisms but is usually too general to map directly onto dataset variables,…

Artificial Intelligence · Computer Science 2026-05-27 Qingyuan Zeng , Ziyang Chen , Pengxiang Cai , Zixin Guan , Anglin Liu , Lang Qin , Xinyao Lai , Jintai Chen

In the rapidly evolving era of Artificial Intelligence (AI), synthetic data are widely used to accelerate innovation while preserving privacy and enabling broader data accessibility. However, the evaluation of synthetic data remains…

In this work, we develop an intelligent user interface that allows users to enter biomedical queries in a natural language, and that presents the answers (possibly with explanations if requested) in a natural language. We develop a rule…

Artificial Intelligence · Computer Science 2010-12-10 Halit Erdogan , Umut Oztok , Yelda Erdem , Esra Erdem