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Understanding complex biomolecular mechanisms requires multi-step reasoning across molecular interactions, signaling cascades, and metabolic pathways. While large language models(LLMs) show promise in such tasks, their application to…

Artificial Intelligence · Computer Science 2025-11-12 Tianwen Lyu , Xiang Zhuang , Keyan Ding , Xinzhe Cao , Lei Liang , Wei Zhao , Qiang Zhang , Huajun Chen

Ontology Matching (OM), is a critical task in knowledge integration, where aligning heterogeneous ontologies facilitates data interoperability and knowledge sharing. Traditional OM systems often rely on expert knowledge or predictive…

Artificial Intelligence · Computer Science 2024-04-24 Hamed Babaei Giglou , Jennifer D'Souza , Felix Engel , Sören Auer

Large Language Models (LLMs) excel at many tasks but often falter on complex problems that require structured, multi-step reasoning. We introduce the Diagram of Thought (DoT), a framework that enables a single LLM to build and navigate a…

Computation and Language · Computer Science 2026-05-15 Yifan Zhang , Yang Yuan , Andrew Chi-Chih Yao

To achieve a flexible and adaptable system, capability ontologies are increasingly leveraged to describe functions in a machine-interpretable way. However, modeling such complex ontological descriptions is still a manual and error-prone…

Artificial Intelligence · Computer Science 2024-10-21 Luis Miguel Vieira da Silva , Aljosha Köcher , Felix Gehlhoff , Alexander Fay

Given unstructured text, Large Language Models (LLMs) are adept at answering simple (single-hop) questions. However, as the complexity of the questions increase, the performance of LLMs degrade. We believe this is due to the overhead…

Computation and Language · Computer Science 2024-06-11 Pranoy Panda , Ankush Agarwal , Chaitanya Devaguptapu , Manohar Kaul , Prathosh A P

Reasoning over OWL 2 is a very expensive task in general, and therefore the W3C identified tractable profiles exhibiting good computational properties. Ontological reasoning for many fragments of OWL 2 can be reduced to the evaluation of…

Artificial Intelligence · Computer Science 2020-03-24 Mario Alviano , Marco Manna

Transforming relational databases into knowledge graphs with enriched ontologies enhances semantic interoperability and unlocks advanced graph-based learning and reasoning over data. However, previous approaches either demand significant…

We propose a framework grounded in Logic Programming for representing and reasoning about business processes from both the procedural and ontological point of views. In particular, our goal is threefold: (1) define a logical language and a…

Artificial Intelligence · Computer Science 2014-10-08 Fabrizio Smith , Maurizio Proietti

Recent advancements in Large Reasoning Models (LRMs), such as OpenAI's o1/o3 and DeepSeek-R1, have demonstrated remarkable performance in specialized reasoning tasks through human-like deliberative thinking and long chain-of-thought…

Artificial Intelligence · Computer Science 2025-11-20 Weixiang Zhao , Xingyu Sui , Jiahe Guo , Yulin Hu , Yang Deng , Yanyan Zhao , Xuda Zhi , Yongbo Huang , Hao He , Wanxiang Che , Ting Liu , Bing Qin

Large Reasoning Models like DeepSeek-R1 mark a fundamental shift in how LLMs approach complex problems. Instead of directly producing an answer for a given input, DeepSeek-R1 creates detailed multi-step reasoning chains, seemingly…

Large Language Models (LLMs) achieve excellent performance in natural language reasoning tasks through pre-training on vast unstructured text, enabling them to understand the logic in natural language and generate logic-consistent…

Computation and Language · Computer Science 2025-11-12 Songze Li , Zhiqiang Liu , Zhaoyan Gong , Xiaoke Guo , Zhengke Gui , Huajun Chen , Wen Zhang

We propose a novel framework to facilitate the on-demand design of data-centric systems by exploiting domain knowledge from an existing ontology. Its key ingredient is a process that we call focusing, which allows to obtain a schema for a…

Logic in Computer Science · Computer Science 2019-04-02 Tomasz Gogacz , Víctor Gutiérrez-Basulto , Yazmín A. Ibáñez-García , Filip Murlak , Magdalena Ortiz , Mantas Šimkus

In the field of software operations, Large Language Models (LLMs) have attracted increasing attention. However, existing research has not yet achieved efficient and effective end-to-end intelligent operations due to low-quality data,…

Machine Learning · Computer Science 2026-05-13 Jingkai He , Pengfei Chen , Chenghui Wu , Shuang Liang , Ye Li , Gou Tan , Xiadao Wen , Chuanfu Zhang

Causality is essential for understanding complex systems, such as the economy, the brain, and the climate. Constructing causal graphs often relies on either data-driven or expert-driven approaches, both fraught with challenges. The former…

Artificial Intelligence · Computer Science 2024-06-12 Kai-Hendrik Cohrs , Gherardo Varando , Emiliano Diaz , Vasileios Sitokonstantinou , Gustau Camps-Valls

With the increasing demand for step-wise, cross-modal, and knowledge-grounded reasoning, multimodal large language models (MLLMs) are evolving beyond the traditional fixed retrieve-then-generate paradigm toward more sophisticated agentic…

Artificial Intelligence · Computer Science 2026-03-03 Xuying Ning , Dongqi Fu , Tianxin Wei , Mengting Ai , Jiaru Zou , Ting-Wei Li , Hanghang Tong , Yada Zhu , Hendrik Hamann , Jingrui He

Large Language Models (LLMs) have succeeded remarkably in various natural language processing (NLP) tasks, yet their reasoning capabilities remain a fundamental challenge. While LLMs exhibit impressive fluency and factual recall, their…

Computation and Language · Computer Science 2025-05-29 Avinash Patil , Aryan Jadon

Medical question-answering (QA) is a critical task for evaluating how effectively large language models (LLMs) encode clinical knowledge and assessing their potential applications in medicine. Despite showing promise on multiple-choice…

Computation and Language · Computer Science 2025-03-06 Guangfu Guo , Kai Zhang , Bryan Hoo , Yujun Cai , Xiaoqian Lu , Nanyun Peng , Yiwei Wang

This paper presents OG-RAG, an Ontology-Grounded Retrieval Augmented Generation method designed to enhance LLM-generated responses by anchoring retrieval processes in domain-specific ontologies. While LLMs are widely used for tasks like…

Computation and Language · Computer Science 2024-12-23 Kartik Sharma , Peeyush Kumar , Yunqing Li

Modern Question Answering (QA) and Reasoning approaches based on Large Language Models (LLMs) commonly use prompting techniques, such as Chain-of-Thought (CoT), assuming the resulting generation will have a more granular exploration and…

Artificial Intelligence · Computer Science 2025-09-22 Erik Arakelyan , Pasquale Minervini , Pat Verga , Patrick Lewis , Isabelle Augenstein

While large language models (LLMs) have shown remarkable capabilities in natural language processing, they struggle with complex, multi-step reasoning tasks involving knowledge graphs (KGs). Existing approaches that integrate LLMs and KGs…

Computation and Language · Computer Science 2024-09-25 Zixuan Dong , Baoyun Peng , Yufei Wang , Jia Fu , Xiaodong Wang , Yongxue Shan , Xin Zhou
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