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Environmental stochasticity is known to be a destabilizing factor, increasing abundance fluctuations and extinction rates of populations. However, the stability of a community may benefit from the differential response of species to…

Populations and Evolution · Quantitative Biology 2016-02-10 Matan Danino , Nadav M. Shnerb , Sandro Azaele , William E. Kunin , David A. Kessler

Quantifying interaction strength between species is of interest in food web studies for understanding population dynamics. Theory has run ahead of experiment in solving equations describing ecological systems (the Lotka-Volterra equations,…

Populations and Evolution · Quantitative Biology 2013-05-07 Joshua M. Courtney , Amy C. Courtney , Michael W. Courtney

Variability on external conditions has important consequences for the dynamics and the organization of biological systems. In many cases, the characteristic timescale of environmental changes as well as their correlations play a fundamental…

Populations and Evolution · Quantitative Biology 2017-10-03 Tommaso Spanio , Jorge Hidalgo , Miguel A. Muñoz

Two mathematical models of macroevolution are studied. These models have population dynamics at the species level, and mutations and extinction of species are also included. The population dynamics are updated by difference equations with…

Populations and Evolution · Quantitative Biology 2014-04-16 Yohsuke Murase , Takashi Shimada , Nobuyasu Ito , Per Arne Rikvold

We study coagulation-fragmentation equations inspired by a simple model proposed in fisheries science to explain data for the size distribution of schools of pelagic fish. Although the equations lack detailed balance and admit no…

Analysis of PDEs · Mathematics 2016-11-03 Pierre Degond , Jian-Guo Liu , Robert L. Pego

We explore a class of hybrid (piecewise deterministic) systems characterized by a large number of individuals inhabiting an environment whose state is described by a set of continuous variables. We use analytical and numerical methods from…

Statistical Mechanics · Physics 2012-09-10 John Realpe-Gomez , Tobias Galla , Alan J. McKane

A parabolic stochastic PDE is studied analytically and numerically, when a bifurcation parameter is slowly increased through its critical value. The aim is to understand the effect of noise on delayed bifurcations in systems with spatial…

adap-org · Physics 2008-02-03 G. D. Lythe

According to the criticality hypothesis, collective biological systems should operate in a special parameter region, close to so-called critical points, where the collective behavior undergoes a qualitative change between different…

Populations and Evolution · Quantitative Biology 2021-06-09 Pascal P. Klamser , Pawel Romanczuk

Fish often travel in highly organized schools. One of the most quoted functions of these configurations is energy savings. Here, we verified the hypothesis and explored the mechanism through series of experiments on "schooling" robotic…

Biological Physics · Physics 2015-08-14 Liang Li , Lichao Jia , Guangming Xie

Real-world systems are often complex, dynamic, and nonlinear. Understanding the dynamics of a system from its observed time series is key to the prediction and control of the system's behavior. While most existing techniques tacitly assume…

Computation · Statistics 2015-05-19 Bing Wang , Jie Sun , Adilson E. Motter

Mathematical modelling of the evolution of the size-spectrum dynamics in aquatic ecosystems was discovered to be a powerful tool to have a deeper insight into impacts of human- and environmental driven changes on the marine ecosystem. In…

Analysis of PDEs · Mathematics 2024-01-02 Laura Kanzler , Benoit Perthame , Benoit Sarels

Biological systems (among others) may respond to a large variety of distinct external stimuli, or signals. These perturbations will generally be presented to the system not singly, but in various combinations, so that a proper understanding…

Quantitative Methods · Quantitative Biology 2011-06-24 Dennis Wylie

We study a model ecosystem by means of dynamical techniques from disordered systems theory. The model describes a set of species subject to competitive interactions through a background of resources, which they feed upon. Additionally…

Populations and Evolution · Quantitative Biology 2009-11-13 Yoshimi Yoshino , Tobias Galla , Kei Tokita

In the co-sparse analysis model a set of filters is applied to a signal out of the signal class of interest yielding sparse filter responses. As such, it may serve as a prior in inverse problems, or for structural analysis of signals that…

Machine Learning · Computer Science 2015-10-07 Matthias Seibert , Julian Wörmann , Rémi Gribonval , Martin Kleinsteuber

Shifting ecosystem disturbance patterns due to climate change (e.g. storms, droughts, wildfires) or direct human interference (e.g. harvests, nutrient loading) highlight the importance of quantifying and strengthening the resilience of…

Populations and Evolution · Quantitative Biology 2018-03-22 Katherine Meyer , Alanna Hoyer-Leitzel , Sarah Iams , Ian Klasky , Victoria Lee , Stephen Ligtenberg , Erika Bussmann , Mary Lou Zeeman

Collective behaviors exhibited by animal groups, such as fish schools, bird flocks, or insect swarms are fascinating examples of self-organization in biology. Concepts and methods from statistical physics have been used to argue…

Biological Physics · Physics 2023-03-14 Pawel Romanczuk , Bryan C. Daniels

In this paper, an attempt is made to understand the dynamics of a three-dimensional discrete fractional-order eco-epidemiological model with Holling type II functional response. We first discretize a fractional-order predator-prey-parasite…

Dynamical Systems · Mathematics 2021-04-15 Shuvojit Mondal , Xianbing Cao , Nandadulal Bairagi

Noise and spatial degrees of freedom characterize most ecosystems. Some aspects of their influence on the coevolution of populations with cyclic interspecies competition have been demonstrated in recent experiments [e.g. B. Kerr et al.,…

Populations and Evolution · Quantitative Biology 2007-12-08 Tobias Reichenbach , Mauro Mobilia , Erwin Frey

Fragmentation can be observed in nature and in everyday life on a wide range of length scales and for all kinds of technical applications. Most studies on dynamic failure focus on the behaviour of bulk systems in one, two and three…

Soft Condensed Matter · Physics 2015-10-02 Falk K. Wittel , Ferenc Kun , Hans J. Herrmann , Bernd H. Kröplin

Data-driven methods have recently made great progress in the discovery of partial differential equations (PDEs) from spatial-temporal data. However, several challenges remain to be solved, including sparse noisy data, incomplete candidate…

Computational Physics · Physics 2021-09-28 Hao Xu , Dongxiao Zhang , Junsheng Zeng