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This study introduces a novel software tool leveraging large language model (LLM) prompts, designed to automate the generation of academic articles from Python code a significant advancement in the fields of biomedical informatics and…
The task of automatic text summarization produces a concise and fluent text summary while preserving key information and overall meaning. Recent approaches to document-level summarization have seen significant improvements in recent years…
We present the sTeX+ system, a user-driven advancement of sTeX - a semantic extension of LaTeX that allows for producing high-quality PDF documents for (proof)reading and printing, as well as semantic XML/OMDoc documents for the Web or…
We introduce SciWING, an open-source software toolkit which provides access to pre-trained models for scientific document processing tasks, inclusive of citation string parsing and logical structure recovery. SciWING enables researchers to…
Many research groups aspire to make data and code FAIR and reproducible, yet struggle because the data and code life cycles are disconnected, executable environments are often missing from published work, and technical skill requirements…
Understanding complex scientific and mathematical concepts, particularly those presented in dense research papers, poses a significant challenge for learners. Dynamic visualizations can greatly enhance comprehension, but creating them…
How many times have you tried to re-implement a past CAV tool paper, and failed? Reliably reproducing published scientific discoveries has been acknowledged as a barrier to scientific progress for some time but there remains only a small…
Computational reproducibility of scientific results, that is, the execution of a computational experiment (e.g., a script) using its original settings (data, code, etc.), should always be possible. However, reproducibility has become a…
The accelerating pace of research on autoregressive generative models has produced thousands of papers, making manual literature surveys and reproduction studies increasingly impractical. We present a fully open-source, reproducible…
Academic trade requires juggling multiple variants of the same content published in different formats: manuscripts, presentations, posters and computational notebooks. The need to track versions to accommodate for the…
WorkingWiki is a software extension for the popular MediaWiki platform that makes a wiki into a powerful environment for collaborating on publication-quality manuscripts and software projects. Developed in Jonathan Dushoff's theoretical…
Scientific advancement relies on the ability to share and reproduce results. When data analysis or calculations are carried out using software written by scientists there are special challenges around code versions, quality and code…
In this work, we tackle the problem of structured text generation, specifically academic paper generation in $\LaTeX{}$, inspired by the surprisingly good results of basic character-level language models. Our motivation is using more recent…
The exponential growth of scientific literature in PDF format necessitates advanced tools for efficient and accurate document understanding, summarization, and content optimization. Traditional methods fall short in handling complex layouts…
Over the last decades the Web has evolved from a human-human communication network to a network of complex human-machine interactions. An increasing amount of data is available as Linked Data which allows machines to "understand" the data,…
This technical report introduces Uni-Parser, an industrial-grade document parsing engine tailored for scientific literature and patents, delivering high throughput, robust accuracy, and cost efficiency. Unlike pipeline-based document…
The general purpose of a scientific publication is the exchange and spread of knowledge. A publication usually reports a scientific result and tries to convince the reader that it is valid. With an ever-growing number of papers relying on…
Nolan and Temple Lang argue that "the ability to express statistical computations is an essential skill." A key related capacity is the ability to conduct and present data analysis in a way that another person can understand and replicate.…
Scientific writing is an iterative process that generates rich revision traces, yet publicly available resources typically expose only final or near-final versions of papers. This limits empirical study of revision behaviour and evaluation…
Computational reproducibility, the possibility for independent researchers to exactly reproduce published empirical results, is fundamental to science. Despite its importance, the proportion of research articles aiming for reproducibility…