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Graph neural networks face two fundamental challenges rooted in the linear structure of Euclidean vector spaces: (1) Current architectures represent geometry through vectors (directions, gradients), yet many tasks require matrix-valued…

Machine Learning · Computer Science 2026-04-23 Yuhan Peng , Junwen Dong , Yuzhi Zeng , Hao Li , Ce Ju , Huitao Feng , Diaaeldin Taha , Anna Wienhard , Kelin Xia

Graph Neural Networks (GNNs) have emerged as powerful tools for predicting outcomes in graph-structured data. However, a notable limitation of GNNs is their inability to provide robust uncertainty estimates, which undermines their…

Machine Learning · Computer Science 2024-10-10 S. Akansha

Graph Neural Networks (GNNs) excel on homophilous graphs but often fail under heterophily due to self-reinforcing and phase-inconsistent signals. We propose a \textbf{G}auge-\textbf{E}quivariant Graph Network with \textbf{S}elf-Interference…

Machine Learning · Computer Science 2026-05-20 Yoonhyuk Choi , Jiho Choi , Jiwoo Kang

Graph Neural Networks (GNNs) have led to state-of-the-art performance on a variety of machine learning tasks such as recommendation, node classification and link prediction. Graph neural network models generate node embeddings by merging…

Machine Learning · Computer Science 2020-11-04 Yunpeng Weng , Xu Chen , Liang Chen , Wei Liu

Graph neural networks (GNNs) have struggled to outperform traditional optimization methods on combinatorial problems, limiting their practical impact. We address this gap by introducing a novel chaining procedure for the graph alignment…

Machine Learning · Computer Science 2025-10-06 Marc Lelarge

While Graph Neural Networks (GNNs) are powerful models for learning representations on graphs, most state-of-the-art models do not have significant accuracy gain beyond two to three layers. Deep GNNs fundamentally need to address: 1).…

Spectral Graph Neural Networks (Spectral GNNs) for node classification promise frequency-domain filtering on graphs, yet rest on flawed foundations. Recent work shows that graph Laplacian eigenvectors do not in general have the key…

Machine Learning · Computer Science 2026-03-27 Qin Jiang , Chengjia Wang , Michael Lones , Dongdong Chen , Wei Pang

Self-supervised heterogeneous graph learning (SHGL) has shown promising potential in diverse scenarios. However, while existing SHGL methods share a similar essential with clustering approaches, they encounter two significant limitations:…

Artificial Intelligence · Computer Science 2024-12-03 Yujie Mo , Zhihe Lu , Runpeng Yu , Xiaofeng Zhu , Xinchao Wang

Subgraph classification is an emerging field in graph representation learning where the task is to classify a group of nodes (i.e., a subgraph) within a graph. Subgraph classification has applications such as predicting the cellular…

Machine Learning · Computer Science 2023-04-19 Shweta Ann Jacob , Paul Louis , Amirali Salehi-Abari

Graph neural networks (GNNs) have emerged as a powerful framework for a wide range of node-level graph learning tasks. However, their performance typically depends on random or minimally informed initial feature representations, where poor…

Machine Learning · Computer Science 2026-02-24 Shiyu Chen , Cencheng Shen , Youngser Park , Carey E. Priebe

The emergence of graph neural networks (GNNs) has offered a powerful tool for semi-supervised node classification tasks. Subsequent studies have achieved further improvements through refining the message passing schemes in GNN models or…

Machine Learning · Computer Science 2025-11-26 Songbo Wang , Renchi Yang , Yurui Lai , Xiaoyang Lin , Tsz Nam Chan

Graph Echo State Networks (GESN) have already demonstrated their efficacy and efficiency in graph classification tasks. However, semi-supervised node classification brought out the problem of over-smoothing in end-to-end trained deep…

Machine Learning · Computer Science 2022-10-31 Domenico Tortorella , Alessio Micheli

Recent years have witnessed fast developments of graph neural networks (GNNs) that have benefited myriad graph analytic tasks and applications. Most GNNs rely on the homophily assumption that nodes belonging to the same class are more…

Machine Learning · Computer Science 2026-04-21 Xin Zheng , Yi Wang , Yixin Liu , Ming Li , Miao Zhang , Di Jin , Philip S. Yu , Shirui Pan

Graph Neural Networks (GNNs) typically operate by message-passing, where the state of a node is updated based on the information received from its neighbours. Most message-passing models act as graph convolutions, where features are mixed…

Graph neural networks (GNNs) have gained popularity for various graph-related tasks. However, similar to deep neural networks, GNNs are also vulnerable to adversarial attacks. Empirical studies have shown that adversarially robust…

Machine Learning · Statistics 2024-07-09 Tan Sun , Junhong Lin

This paper explores the applications and challenges of graph neural networks (GNNs) in processing complex graph data brought about by the rapid development of the Internet. Given the heterogeneity and redundancy problems that graph data…

Machine Learning · Computer Science 2024-10-24 Jianjun Wei , Yue Liu , Xin Huang , Xin Zhang , Wenyi Liu , Xu Yan

We investigate the representation power of graph neural networks in the semi-supervised node classification task under heterophily or low homophily, i.e., in networks where connected nodes may have different class labels and dissimilar…

Machine Learning · Computer Science 2020-10-26 Jiong Zhu , Yujun Yan , Lingxiao Zhao , Mark Heimann , Leman Akoglu , Danai Koutra

Graph neural networks (GNNs) are known to be vulnerable to oversmoothing due to their implicit homophily assumption. We mitigate this problem with a novel scheme that regulates the aggregation of messages, modulating the type and extent of…

Machine Learning · Computer Science 2025-12-03 Haishan Wang , Arno Solin , Vikas Garg

Interpreting graph neural networks (GNNs) is difficult because message passing mixes signals and internal channels rarely align with human concepts. We study superposition, the sharing of directions by multiple features, directly in the…

Machine Learning · Computer Science 2026-01-19 Lukas Pertl , Han Xuanyuan , Pietro Liò

Self-supervised learning has shown its promising capability in graph representation learning in recent work. Most existing pre-training strategies usually choose the popular Graph neural networks (GNNs), which can be seen as a special form…

Machine Learning · Computer Science 2023-06-16 Yilin Ding , Zhen Liu , Hao Hao
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