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Reproducibility of computational results remains a challenge in materials science, as simulation workflows and parameters are often reported only in unstructured text and tables. While literature data are valuable for validation and reuse,…

Objective: Human-curated disease ontologies are widely used for diagnostic evaluation, treatment and data comparisons over time, and clinical decision support. The classification principles underlying these ontologies are guided by the…

Molecular Networks · Quantitative Biology 2021-04-02 Giorgio Grani , Lorenzo Madeddu , Paola Velardi

The Semantic Web standardizes concept meaning for humans and machines, enabling machine-operable content and consistent interpretation that improves advanced analytics. Reusing ontologies speeds development and enforces consistency, yet…

Artificial Intelligence · Computer Science 2026-04-15 Aryan Singh Dalal , Maria Baloch , Asiyah Yu Lin , Anna Maria Masci , Kathleen M. Jagodnik , Hande Kucuk McGinty

SQL has attained widespread adoption, but Business Intelligence tools still use their own higher level languages based upon a multidimensional paradigm. Composable calculations are what is missing from SQL, and we propose a new kind of…

Databases · Computer Science 2025-01-14 Julian Hyde , John Fremlin

Prior work has combined chain-of-thought prompting in large language models (LLMs) with programmatic representations to perform effective and transparent reasoning. While such an approach works well for tasks that only require forward…

Computation and Language · Computer Science 2023-10-13 Xi Ye , Qiaochu Chen , Isil Dillig , Greg Durrett

Query evaluation over probabilistic databases is known to be intractable in many cases, even in data complexity, i.e., when the query is fixed. Although some restrictions of the queries [19] and instances [4] have been proposed to lower the…

Databases · Computer Science 2019-08-28 Antoine Amarilli , Mikaël Monet , Pierre Senellart

This research presents a comprehensive methodology for utilizing an ontology-driven structured prompts system in interplay with ChatGPT, a widely used large language model (LLM). The study develops formal models, both information and…

Artificial Intelligence · Computer Science 2023-07-12 Oleksandr Palagin , Vladislav Kaverinskiy , Anna Litvin , Kyrylo Malakhov

We study the problem of counting answers to unions of conjunctive queries (UCQs) under structural restrictions on the input query. Concretely, given a class C of UCQs, the problem #UCQ(C) provides as input a UCQ Q in C and a database D and…

Discrete Mathematics · Computer Science 2026-02-24 Jacob Focke , Leslie Ann Goldberg , Marc Roth , Stanislav Živný

Reliability-oriented sensitivity analysis aims at combining both reliability and sensitivity analyses by quantifying the influence of each input variable of a numerical model on a quantity of interest related to its failure. In particular,…

Statistics Theory · Mathematics 2022-10-25 Julien Demange-Chryst , François Bachoc , Jérôme Morio

We consider answering queries where the underlying data is available only over limited interfaces which provide lookup access to the tuples matching a given binding, but possibly restricting the number of output tuples returned. Interfaces…

Databases · Computer Science 2019-08-28 Antoine Amarilli , Michael Benedikt

Task-oriented semantic parsing models typically have high resource requirements: to support new ontologies (i.e., intents and slots), practitioners crowdsource thousands of samples for supervised fine-tuning. Partly, this is due to the…

Computation and Language · Computer Science 2021-04-16 Shrey Desai , Akshat Shrivastava , Alexander Zotov , Ahmed Aly

We consider a semantic class, weakly-chase-sticky (WChS), and a syntactic subclass, jointly-weakly-sticky (JWS), of Datalog+- programs. Both extend that of weakly-sticky (WS) programs, which appear in our applications to data quality. For…

Databases · Computer Science 2015-04-15 Mostafa Milani , Leopoldo Bertossi

The representation of workflows and processes is essential in materials science engineering, where experimental and computational reproducibility depend on structured and semantically coherent process models. Although numerous ontologies…

Information Retrieval · Computer Science 2025-09-30 Ebrahim Norouzi , Sven Hertling , Jörg Waitelonis , Harald Sack

The landscape of Large Language Models (LLMs) shifts rapidly towards dynamic, multi-agent systems. This introduces a fundamental challenge in establishing computational trust, specifically how one agent can verify that another's output was…

Artificial Intelligence · Computer Science 2025-09-16 Zan-Kai Chong , Hiroyuki Ohsaki , Bryan Ng

Uncertainty estimation is crucial for the reliability of safety-critical human and artificial intelligence (AI) interaction systems, particularly in the domain of healthcare engineering. However, a robust and general uncertainty measure for…

Computation and Language · Computer Science 2024-11-19 Zhiyuan Wang , Jinhao Duan , Chenxi Yuan , Qingyu Chen , Tianlong Chen , Yue Zhang , Ren Wang , Xiaoshuang Shi , Kaidi Xu

Amid the recent uptake of Generative AI, sociotechnical scholars and critics have traced a multitude of resulting harms, with analyses largely focused on values and axiology (e.g., bias). While value-based analyses are crucial, we argue…

Human-Computer Interaction · Computer Science 2025-04-07 Nava Haghighi , Sunny Yu , James Landay , Daniela Rosner

While dense biomedical embeddings achieve strong performance, their black-box nature limits their utility in clinical decision-making. Recent question-based interpretable embeddings represent text as binary answers to natural-language…

Computation and Language · Computer Science 2026-03-04 Yixuan Tang , Zhenghong Lin , Yandong Sun , Wynne Hsu , Mong Li Lee , Anthony K. H. Tung

Although demonstrating remarkable performance on reasoning tasks, Large Language Models (LLMs) still tend to fabricate unreliable responses when confronted with problems that are unsolvable or beyond their capability, severely undermining…

Computation and Language · Computer Science 2025-11-13 Boyang Xue , Qi Zhu , Rui Wang , Sheng Wang , Hongru Wang , Minda Hu , Fei Mi , Yasheng Wang , Lifeng Shang , Qun Liu , Kam-Fai Wong

Self-Supervised Learning (SSL) has gained traction for its ability to learn rich representations with low labeling costs, applicable across diverse downstream tasks. However, assessing the downstream-task performance remains challenging due…

Sound · Computer Science 2025-10-07 Takashi Maekaku , Keita Goto , Jinchuan Tian , Yusuke Shinohara , Shinji Watanabe

Pretrained transformer-based Language Models (LMs) are well-known for their ability to achieve significant improvement on NLP tasks, but their black-box nature, which leads to a lack of interpretability, has been a major concern. My…

Computation and Language · Computer Science 2024-12-06 Ximing Wen
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