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Purpose: Large Language Models (LLMs) like GPT (Generative Pre-trained Transformer) from OpenAI and LLaMA (Large Language Model Meta AI) from Meta AI are increasingly recognized for their potential in the field of cheminformatics,…

Biomolecules · Quantitative Biology 2024-05-22 Shaghayegh Sadeghi , Alan Bui , Ali Forooghi , Jianguo Lu , Alioune Ngom

Purpose: Higher education institutions face increasing pressure to audit course designs for generative AI (GenAI) integration. This paper presents an end-to-end method for using large language models (LLMs) to scan course information sheets…

Advanced epidemic forecasting is critical for enabling precision containment strategies, highlighting its strategic importance for public health security. While recent advances in Large Language Models (LLMs) have demonstrated effectiveness…

Machine Learning · Computer Science 2025-05-20 Chenghua Gong , Rui Sun , Yuhao Zheng , Juyuan Zhang , Tianjun Gu , Liming Pan , Linyuan Lv

Nowadays, developers increasingly rely on solutions powered by Large Language Models (LLM) to assist them with their coding tasks. This makes it crucial to align these tools with human values to prevent malicious misuse. In this paper, we…

Software Engineering · Computer Science 2025-04-03 Ali Al-Kaswan , Sebastian Deatc , Begüm Koç , Arie van Deursen , Maliheh Izadi

Social media text shows promise for monitoring trends in the opioid overdose crisis; however, the overwhelming majority of social media text is unrelated to opioids. When leveraging social media text to monitor trends in the ongoing opioid…

Computation and Language · Computer Science 2026-03-12 Kristy A. Carpenter , Issah A. Samori , Mathew V. Kiang , Keith Humphreys , Anna Lembke , Johannes C. Eichstaedt , Russ B. Altman

We address the task of hierarchical multi-label classification (HMC) of scientific documents at an industrial scale, where hundreds of thousands of documents must be classified across thousands of dynamic labels. The rapid growth of…

Artificial Intelligence · Computer Science 2024-12-09 Seyed Amin Tabatabaei , Sarah Fancher , Michael Parsons , Arian Askari

Background: Modern large language models (LLMs) offer powerful reasoning that converts narratives into structured, taxonomy-aligned data, revealing patterns across planning, delivery, and verification. Embedded as agentic tools, LLMs can…

Deep Learning (DL) techniques are increasingly applied in scientific studies across various domains to address complex research questions. However, the methodological details of these DL models are often hidden in the unstructured text. As…

Information Retrieval · Computer Science 2024-11-15 Vamsi Krishna Kommineni , Birgitta König-Ries , Sheeba Samuel

Background: Identification of the interactions and regulatory relations between biomolecules play pivotal roles in understanding complex biological systems and the mechanisms underlying diverse biological functions. However, the collection…

Computation and Language · Computer Science 2025-04-24 Gilchan Park , Byung-Jun Yoon , Xihaier Luo , Vanessa López-Marrero , Shinjae Yoo , Shantenu Jha

Gene set analysis is a mainstay of functional genomics, but it relies on curated databases of gene functions that are incomplete. Here we evaluate five Large Language Models (LLMs) for their ability to discover the common biological…

Online marketplaces, while revolutionizing global commerce, have inadvertently facilitated the proliferation of illicit activities, including drug trafficking, counterfeit sales, and cybercrimes. Traditional content moderation methods such…

Computation and Language · Computer Science 2026-03-06 Quoc Khoa Tran , Thanh Thi Nguyen , Campbell Wilson

Large Language Models (LLMs) have drawn a lot of attention due to their strong performance on a wide range of natural language tasks, since the release of ChatGPT in November 2022. LLMs' ability of general-purpose language understanding and…

Computation and Language · Computer Science 2025-03-25 Shervin Minaee , Tomas Mikolov , Narjes Nikzad , Meysam Chenaghlu , Richard Socher , Xavier Amatriain , Jianfeng Gao

Recent work suggests that large language models (LLMs) can improve performance of speech tasks compared to existing systems. To support their claims, results on LibriSpeech and Common Voice are often quoted. However, this work finds that a…

Audio and Speech Processing · Electrical Eng. & Systems 2025-06-06 Yuan Tseng , Titouan Parcollet , Rogier van Dalen , Shucong Zhang , Sourav Bhattacharya

Large language models (LLMs) have demonstrated rapid progress across a wide array of domains. Owing to the very large number of parameters and training data in LLMs, these models inherently encompass an expansive and comprehensive materials…

Materials Science · Physics 2024-11-20 Siyu Liu , Tongqi Wen , A. S. L. Subrahmanyam Pattamatta , David J. Srolovitz

This work investigates the applicability of recent generative Large Language Models (LLMs), such as the GPT series and Flan-T5, to ontology alignment for identifying concept equivalence mappings across ontologies. To test the zero-shot…

Artificial Intelligence · Computer Science 2023-09-15 Yuan He , Jiaoyan Chen , Hang Dong , Ian Horrocks

Many studies have demonstrated that large language models (LLMs) can produce harmful responses, exposing users to unexpected risks when LLMs are deployed. Previous studies have proposed comprehensive taxonomies of the risks posed by LLMs,…

Computation and Language · Computer Science 2024-08-06 Yuxia Wang , Zenan Zhai , Haonan Li , Xudong Han , Lizhi Lin , Zhenxuan Zhang , Jingru Zhao , Preslav Nakov , Timothy Baldwin

Manual vulnerability scoring, such as assigning Common Vulnerability Scoring System (CVSS) scores, is a resource-intensive process that is often influenced by subjective interpretation. This study investigates the potential of…

Cryptography and Security · Computer Science 2026-01-06 Sima Jafarikhah , Daniel Thompson , Eva Deans , Hossein Siadati , Yi Liu

Social media platforms utilize Machine Learning (ML) and Artificial Intelligence (AI) powered recommendation algorithms to maximize user engagement, which can result in inadvertent exposure to harmful content. Current moderation efforts,…

Computation and Language · Computer Science 2025-05-30 Rajvardhan Oak , Muhammad Haroon , Claire Jo , Magdalena Wojcieszak , Anshuman Chhabra

Detoxifying multilingual Large Language Models (LLMs) has become crucial due to their increasing global use. In this work, we explore zero-shot cross-lingual generalization of preference tuning in detoxifying LLMs. Unlike previous studies…

Computation and Language · Computer Science 2024-11-11 Xiaochen Li , Zheng-Xin Yong , Stephen H. Bach

Ontologies have become essential in today's digital age as a way of organising the vast amount of readily available unstructured text. In providing formal structure to this information, ontologies have immense value and application across…

Computation and Language · Computer Science 2025-11-11 Dekai Zhang , Simone Conia , Antonio Rago