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Although supervised machine learning is popular for information extraction from clinical notes, creating large annotated datasets requires extensive domain expertise and is time-consuming. Meanwhile, large language models (LLMs) have…

Computation and Language · Computer Science 2024-01-26 Madhumita Sushil , Travis Zack , Divneet Mandair , Zhiwei Zheng , Ahmed Wali , Yan-Ning Yu , Yuwei Quan , Atul J. Butte

Large Language Models (LLMs), originally developed for natural language processing (NLP), have demonstrated the potential to generalize across modalities and domains. With their in-context learning (ICL) capabilities, LLMs can perform…

Artificial Intelligence · Computer Science 2025-08-26 Nikolaos Pavlidis , Vasilis Perifanis , Symeon Symeonidis , Pavlos S. Efraimidis

Large language models (LLMs) have strong capabilities in solving diverse natural language processing tasks. However, the safety and security issues of LLM systems have become the major obstacle to their widespread application. Many studies…

Computation and Language · Computer Science 2024-01-12 Tianyu Cui , Yanling Wang , Chuanpu Fu , Yong Xiao , Sijia Li , Xinhao Deng , Yunpeng Liu , Qinglin Zhang , Ziyi Qiu , Peiyang Li , Zhixing Tan , Junwu Xiong , Xinyu Kong , Zujie Wen , Ke Xu , Qi Li

This paper describes a rapid feasibility study of using GPT-4, a large language model (LLM), to (semi)automate data extraction in systematic reviews. Despite the recent surge of interest in LLMs there is still a lack of understanding of how…

Computation and Language · Computer Science 2025-02-14 Lena Schmidt , Kaitlyn Hair , Sergio Graziosi , Fiona Campbell , Claudia Kapp , Alireza Khanteymoori , Dawn Craig , Mark Engelbert , James Thomas

The opacity in developing large language models (LLMs) is raising growing concerns about the potential contamination of public benchmarks in the pre-training data. Existing contamination detection methods are typically based on the text…

Computation and Language · Computer Science 2024-10-31 Feng Yao , Yufan Zhuang , Zihao Sun , Sunan Xu , Animesh Kumar , Jingbo Shang

Recent advancements in deep learning, particularly large language models (LLMs), made a significant impact on how researchers study microbiome and metagenomics data. Microbial protein and genomic sequences, like natural languages, form a…

Quantitative Methods · Quantitative Biology 2024-09-18 Binghao Yan , Yunbi Nam , Lingyao Li , Rebecca A. Deek , Hongzhe Li , Siyuan Ma

Recent advancements in Large Language Models (LLMs), such as ChatGPT and LLaMA, have significantly transformed Natural Language Processing (NLP) with their outstanding abilities in text generation, summarization, and classification.…

Computation and Language · Computer Science 2024-08-12 Md Nazmus Sakib , Md Athikul Islam , Royal Pathak , Md Mashrur Arifin

Qualitative analysis of textual contents unpacks rich and valuable information by assigning labels to the data. However, this process is often labor-intensive, particularly when working with large datasets. While recent AI-based tools…

Computation and Language · Computer Science 2023-04-24 Ziang Xiao , Xingdi Yuan , Q. Vera Liao , Rania Abdelghani , Pierre-Yves Oudeyer

Metadata play a crucial role in ensuring the findability, accessibility, interoperability, and reusability of datasets. This paper investigates the potential of large language models (LLMs), specifically GPT-4, to improve adherence to…

Artificial Intelligence · Computer Science 2025-02-24 Sowmya S. Sundaram , Benjamin Solomon , Avani Khatri , Anisha Laumas , Purvesh Khatri , Mark A. Musen

This paper presents an exploratory study that harnesses the capabilities of large language models (LLMs) to mine key ecological entities from invasion biology literature. Specifically, we focus on extracting species names, their locations,…

Computation and Language · Computer Science 2025-01-31 Jennifer D'Souza , Zachary Laubach , Tarek Al Mustafa , Sina Zarrieß , Robert Frühstückl , Phyllis Illari

Large language models (LLMs) such as those embedded in 'chatbots' are accelerating and democratizing research by providing comprehensible information and expertise from many different fields. However, these models may also confer easy…

Computers and Society · Computer Science 2023-06-07 Emily H. Soice , Rafael Rocha , Kimberlee Cordova , Michael Specter , Kevin M. Esvelt

Evidence-enhanced detectors present remarkable abilities in identifying malicious social text. However, the rise of large language models (LLMs) brings potential risks of evidence pollution to confuse detectors. This paper explores…

Computation and Language · Computer Science 2025-05-30 Herun Wan , Minnan Luo , Zhixiong Su , Guang Dai , Xiang Zhao

Large language models (LLMs) such as ChatGPT, Gemini, LlaMa, and Claude are trained on massive quantities of text parsed from the internet and have shown a remarkable ability to respond to complex prompts in a manner often indistinguishable…

Optics · Physics 2025-04-01 Darui Lu , Yang Deng , Jordan M. Malof , Willie J. Padilla

Managing clinical trial information is currently a significant challenge for the medical industry, as traditional methods are both time-consuming and costly. This paper proposes a simple yet effective methodology to extract and integrate…

Artificial Intelligence · Computer Science 2024-12-20 Berkan Çakır

Large Language Models (LLMs) have shown significant promise across various natural language processing tasks. However, their application in the field of pathology, particularly for extracting meaningful insights from unstructured medical…

Computation and Language · Computer Science 2025-03-04 Rachit Saluja , Jacob Rosenthal , Yoav Artzi , David J. Pisapia , Benjamin L. Liechty , Mert R. Sabuncu

Recent advancements in Large Language Models (LLMs) have demonstrated significant progress in various areas, such as text generation and code synthesis. However, the reliability of performance evaluation has come under scrutiny due to data…

Computation and Language · Computer Science 2025-06-06 Yuxing Cheng , Yi Chang , Yuan Wu

Large language models (LLMs) offer promising opportunities for organizational research. However, their built-in moderation systems can create problems when researchers try to analyze harmful content, often refusing to follow certain…

Artificial Intelligence · Computer Science 2025-06-23 Mustafa Akben , Aaron Satko

Large language models (LLMs) have the potential to revolutionize computational social science, particularly in automated textual analysis. In this paper, we conduct a systematic evaluation of the promises and risks associated with using…

Computation and Language · Computer Science 2025-07-29 Hao Lin , Yongjun Zhang

Large Language Models (LLMs), such as ChatGPT, have taken the world by storm and have passed certain forms of the Turing test. However, LLMs are not limited to human language and analyze sequential data, such as DNA, protein, and gene…

Genomics · Quantitative Biology 2024-01-08 Hilbert Yuen In Lam , Xing Er Ong , Marek Mutwil

The manual, resource-intensive process of complying with the EU Taxonomy presents a significant challenge for companies. While Large Language Models (LLMs) offer a path to automation, research is hindered by a lack of public benchmark…

Computation and Language · Computer Science 2026-01-01 Jonathan Schmoll , Adam Jatowt