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Medical text learning has recently emerged as a promising area to improve healthcare due to the wide adoption of electronic health record (EHR) systems. The complexity of the medical text such as diverse length, mixed text types, and full…

Computation and Language · Computer Science 2022-10-11 Yong He , Cheng Wang , Shun Zhang , Nan Li , Zhaorong Li , Zhenyu Zeng

Knowledge hypergraphs generalize knowledge graphs using hyperedges to connect multiple entities and depict complicated relations. Existing methods either transform hyperedges into an easier-to-handle set of binary relations or view…

Machine Learning · Computer Science 2024-12-18 Mengfan Li , Xuanhua Shi , Chenqi Qiao , Teng Zhang , Hai Jin

Knowledge Graphs (KGs) structure real-world entities and their relationships into triples, enhancing machine reasoning for various tasks. While domain-specific KGs offer substantial benefits, their manual construction is often inefficient…

Computation and Language · Computer Science 2025-06-02 Jiaqi Sun , Shiyou Qian , Zhangchi Han , Wei Li , Zelin Qian , Dingyu Yang , Jian Cao , Guangtao Xue

Medical knowledge graphs (KGs) constructed from Electronic Medical Records (EMR) contain abundant information about patients and medical entities. The utilization of KG embedding models on these data has proven to be efficient for different…

Information Retrieval · Computer Science 2021-04-06 Aynur Guluzade , Endri Kacupaj , Maria Maleshkova

For many years, link prediction on knowledge graphs (KGs) has been a purely transductive task, not allowing for reasoning on unseen entities. Recently, increasing efforts are put into exploring semi- and fully inductive scenarios, enabling…

Machine Learning · Computer Science 2021-07-13 Mehdi Ali , Max Berrendorf , Mikhail Galkin , Veronika Thost , Tengfei Ma , Volker Tresp , Jens Lehmann

Knowledge graphs (KGs) are an important tool for representing complex relationships between entities in the biomedical domain. Several methods have been proposed for learning embeddings that can be used to predict new links in such graphs.…

Artificial Intelligence · Computer Science 2026-05-12 Daniel Daza , Dimitrios Alivanistos , Payal Mitra , Thom Pijnenburg , Michael Cochez , Paul Groth

Entity alignment seeks to find entities in different knowledge graphs (KGs) that refer to the same real-world object. Recent advancement in KG embedding impels the advent of embedding-based entity alignment, which encodes entities in a…

Computation and Language · Computer Science 2020-07-21 Zequn Sun , Qingheng Zhang , Wei Hu , Chengming Wang , Muhao Chen , Farahnaz Akrami , Chengkai Li

Even for a conservative estimate, 80% of enterprise data reside in unstructured files, stored in data lakes that accommodate heterogeneous formats. Classical search engines can no longer meet information seeking needs, especially when the…

Computation and Language · Computer Science 2024-06-06 Qiang Sun , Yuanyi Luo , Wenxiao Zhang , Sirui Li , Jichunyang Li , Kai Niu , Xiangrui Kong , Wei Liu

Real-world knowledge graphs (KGs) contain not only standard triple-based facts, but also more complex, heterogeneous types of facts, such as hyper-relational facts with auxiliary key-value pairs, temporal facts with additional timestamps,…

Computation and Language · Computer Science 2026-03-09 Zhiqiang Liu , Yin Hua , Mingyang Chen , Yichi Zhang , Zhuo Chen , Lei Liang , Wen Zhang

Knowledge graph completion (KGC) is a widely used method to tackle incompleteness in knowledge graphs (KGs) by making predictions for missing links. Description-based KGC leverages pre-trained language models to learn entity and relation…

Computation and Language · Computer Science 2024-03-05 Derong Xu , Ziheng Zhang , Zhenxi Lin , Xian Wu , Zhihong Zhu , Tong Xu , Xiangyu Zhao , Yefeng Zheng , Enhong Chen

Mining Electronic Health Records (EHRs) becomes a promising topic because of the rich information they contain. By learning from EHRs, machine learning models can be built to help human experts to make medical decisions and thus improve…

Machine Learning · Computer Science 2021-01-19 Zheng Liu , Xiaohan Li , Hao Peng , Lifang He , Philip S. Yu

Multi-hop logical reasoning is an established problem in the field of representation learning on knowledge graphs (KGs). It subsumes both one-hop link prediction as well as other more complex types of logical queries. Existing algorithms…

Artificial Intelligence · Computer Science 2022-09-07 Dimitrios Alivanistos , Max Berrendorf , Michael Cochez , Mikhail Galkin

Drug discovery and development is a complex and costly process. Machine learning approaches are being investigated to help improve the effectiveness and speed of multiple stages of the drug discovery pipeline. Of these, those that use…

Artificial Intelligence · Computer Science 2022-09-27 Stephen Bonner , Ian P Barrett , Cheng Ye , Rowan Swiers , Ola Engkvist , Andreas Bender , Charles Tapley Hoyt , William L Hamilton

Knowledge graph (KG) link prediction aims to infer new facts based on existing facts in the KG. Recent studies have shown that using the graph neighborhood of a node via graph neural networks (GNNs) provides more useful information compared…

Computation and Language · Computer Science 2024-02-15 Vardaan Pahuja , Boshi Wang , Hugo Latapie , Jayanth Srinivasa , Yu Su

A Temporal Knowledge Graph (TKG) is a sequence of KGs with respective timestamps, which adopts quadruples in the form of (\emph{subject}, \emph{relation}, \emph{object}, \emph{timestamp}) to describe dynamic facts. TKG reasoning has…

Artificial Intelligence · Computer Science 2022-10-19 Zixuan Li , Zhongni Hou , Saiping Guan , Xiaolong Jin , Weihua Peng , Long Bai , Yajuan Lyu , Wei Li , Jiafeng Guo , Xueqi Cheng

The rapid expansion of publicly-available medical data presents a challenge for clinicians and researchers alike, increasing the gap between the volume of scientific literature and its applications. The steady growth of studies and findings…

Artificial Intelligence · Computer Science 2025-08-06 Taine J. Elliott , Stephen P. Levitt , Ken Nixon , Martin Bekker

Knowledge graphs have proven successful in integrating heterogeneous data across various domains. However, there remains a noticeable dearth of research on their seamless integration among heterogeneous recommender systems, despite…

Information Retrieval · Computer Science 2025-01-08 Junhyuk Kwon , Seokho Ahn , Young-Duk Seo

Knowledge Graphs (KGs) have been applied to many tasks including Web search, link prediction, recommendation, natural language processing, and entity linking. However, most KGs are far from complete and are growing at a rapid pace. To…

Artificial Intelligence · Computer Science 2017-11-10 Baoxu Shi , Tim Weninger

Schema matching is a critical task in data integration, particularly in the medical domain where disparate Electronic Health Record (EHR) systems must be aligned to standard models like OMOP CDM. While Large Language Models (LLMs) have…

Artificial Intelligence · Computer Science 2025-12-02 Mingyu Jeon , Jaeyoung Suh , Suwan Cho

Ontology-based knowledge graphs (KG) are desirable for effective knowledge management and reuse in various decision making scenarios, including design. Creating and populating extensive KG based on specific ontological models can be highly…