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The proper choice of collective variables (CVs) is central to biased-sampling free energy reconstruction methods in molecular dynamics simulations. The PLUMED 2 library, for instance, provides several sophisticated CV choices, implemented…

Computational Physics · Physics 2018-02-28 Toni Giorgino

We propose a framework that lifts the capabilities of graph convolutional networks (GCNs) to scenarios where no input graph is given and increases their robustness to adversarial attacks. We formulate a joint probabilistic model that…

Machine Learning · Computer Science 2020-10-23 Pantelis Elinas , Edwin V. Bonilla , Louis Tiao

Perceptrons are the basic computational unit of artificial neural networks, as they model the activation mechanism of an output neuron due to incoming signals from its neighbours. As linear classifiers, they play an important role in the…

Quantum Physics · Physics 2015-01-28 Maria Schuld , Ilya Sinayskiy , Francesco Petruccione

We propose a new non-parametric framework for learning incrementally stable dynamical systems x' = f(x) from a set of sampled trajectories. We construct a rich family of smooth vector fields induced by certain classes of matrix-valued…

Robotics · Computer Science 2018-04-16 Vikas Sindhwani , Stephen Tu , Mohi Khansari

Finding an embedding space for a linear approximation of a nonlinear dynamical system enables efficient system identification and control synthesis. The Koopman operator theory lays the foundation for identifying the nonlinear-to-linear…

Machine Learning · Computer Science 2020-04-28 Yunzhu Li , Hao He , Jiajun Wu , Dina Katabi , Antonio Torralba

One of the most pressing challenges in artificial intelligence is to make models more transparent to their users. Recently, explainable artificial intelligence has come up with numerous method to tackle this challenge. A promising avenue is…

Machine Learning · Computer Science 2025-09-30 Julia Wenkmann , Damien Garreau

The recent adaptation of deep neural network-based methods to reinforcement learning and planning domains has yielded remarkable progress on individual tasks. Nonetheless, progress on task-to-task transfer remains limited. In pursuit of…

Graph transformation systems have the potential to be realistic models of chemistry, provided a comprehensive collection of reaction rules can be extracted from the body of chemical knowledge. A first key step for rule learning is the…

Discrete Mathematics · Computer Science 2016-04-22 Christoph Flamm , Daniel Merkle , Peter F. Stadler , Uffe Thorsen

Multivariate networks are commonly found in real-world data-driven applications. Uncovering and understanding the relations of interest in multivariate networks is not a trivial task. This paper presents a visual analytics workflow for…

Social and Information Networks · Computer Science 2024-07-04 Hsiao-Ying Lu , Takanori Fujiwara , Ming-Yi Chang , Yang-chih Fu , Anders Ynnerman , Kwan-Liu Ma

A high-gain observer-based cooperative deterministic learning (CDL) control algorithm is proposed in this chapter for a group of identical unicycle-type unmanned ground vehicles (UGVs) to track over desired reference trajectories. For the…

Systems and Control · Electrical Eng. & Systems 2020-02-25 Xiaonan Dong , Paolo Stegagno , Chengzhi Yuan , Wei Zeng

Random walks on simple graphs in connection with electrical resistor networks lead to the definition of Markov chains with transition probability matrix in terms of electrical conductances. We extend this definition to an effective…

Physics and Society · Physics 2007-09-20 Nelson Augusto Alves

Many complex systems are composed of interacting parts, and the underlying laws are usually simple and universal. While graph neural networks provide a useful relational inductive bias for modeling such systems, generalization to new system…

Machine Learning · Computer Science 2022-11-21 Zhe Li , Andreas S. Tolias , Xaq Pitkow

We study how to generate molecule conformations (i.e., 3D structures) from a molecular graph. Traditional methods, such as molecular dynamics, sample conformations via computationally expensive simulations. Recently, machine learning…

Machine Learning · Computer Science 2021-04-01 Minkai Xu , Shitong Luo , Yoshua Bengio , Jian Peng , Jian Tang

While CNNs were long considered state of the art for image processing, the introduction of Transformer architectures has challenged this position. While achieving excellent results in image classification and segmentation, Transformers…

Computer Vision and Pattern Recognition · Computer Science 2025-03-25 DeShin Hwa , Tobias Holmes , Klaus Drechsler

A major challenge in nonadiabatic molecular dynamics is to automatically and objectively identify the key reaction coordinates that drive molecules toward distinct excited-state decay channels. Traditional manual analyses are inefficient…

Chemical Physics · Physics 2025-11-18 Hangxu Liu , Yifei Zhu , Zhenggang Lan

Learning structured task representations from human demonstrations is essential for understanding long-horizon manipulation behaviors, particularly in bimanual settings where action ordering, object involvement, and interaction geometry can…

Robotics · Computer Science 2026-01-19 Franziska Herbert , Vignesh Prasad , Han Liu , Dorothea Koert , Georgia Chalvatzaki

Electronic transitions involving core-level orbitals offer a localized, atomic-site and element specific peek window into statistical systems such as molecular liquids. Although formally understood, the complex relation between structure…

Chemical Physics · Physics 2022-09-02 Johannes Niskanen , Anton Vladyka , J. Antti Kettunen , Christoph J. Sahle

With the advancements of sensor hardware, traffic infrastructure and deep learning architectures, trajectory prediction of vehicles has established a solid foundation in intelligent transportation systems. However, existing solutions are…

Artificial Intelligence · Computer Science 2024-11-13 Jia Quan Loh , Xuewen Luo , Fan Ding , Hwa Hui Tew , Junn Yong Loo , Ze Yang Ding , Susilawati Susilawati , Chee Pin Tan

Existing AI systems for modeling human behavior operate at the level of individuals or detect events after they occur. As a result, they systematically fail to capture the collective dynamics that determine whether a group remains stable or…

Artificial Intelligence · Computer Science 2026-05-14 Helene Malyutina

Group activity recognition is the task of understanding the activity conducted by a group of people as a whole in a multi-person video. Existing models for this task are often impractical in that they demand ground-truth bounding box labels…

Computer Vision and Pattern Recognition · Computer Science 2022-04-06 Dongkeun Kim , Jinsung Lee , Minsu Cho , Suha Kwak