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We derive the porous medium equation from an interacting particle system which belongs to the family of exclusion processes, with nearest neighbor exchanges. The particles follow a degenerate dynamics, in the sense that the jump rates can…
In this paper we consider a system of two coupled nonlinear diffusion--reaction partial differential equations (PDEs) which model the growth of biofilm and consumption of the nutrient. At the scale of interest the biofilm density is subject…
We consider the inverse problem of estimating parameters of a driven diffusion (e.g., the underlying fluid flow, diffusion coefficient, or source terms) from point measurements of a passive scalar (e.g., the concentration of a pollutant).…
This paper develops a class of high-order conservative schemes for contaminant transport with equilibrium adsorption, based on the Integral Method with Variational Limit on block-centered grids. By incorporating four parameters, the scheme…
This paper introduces a novel method for numerically stabilizing sequential continuous adjoint flow solvers utilizing an elliptic relaxation strategy. The proposed approach is formulated as a Partial Differential Equation (PDE) containing a…
We study the pore-scale transport of a conservative scalar forming an advancing mixing front, which can be re-interpreted to predict instantaneous mixing-limited bimolecular reactions. We investigate this using a set of two-dimensional,…
A Bayesian data assimilation scheme is formulated for advection-dominated advective and diffusive evolutionary problems, based upon the Dynamic Likelihood (DLF) approach to filtering. The DLF was developed specifically for hyperbolic…
This work addresses model order reduction for complex moving fronts, which are transported by advection or through a reaction-diffusion process. Such systems are especially challenging for model order reduction since the transport cannot be…
Species transport models typically combine partial differential equations (PDEs) with relations from hindered transport theory to quantify electromigrative, convective, and diffusive transport through complex nanoporous systems; however,…
Data assimilation methodologies are designed to incorporate noisy observations of a physical system into an underlying model in order to infer the properties of the state of the system. Filters refer to a class of data assimilation…
An analysis of traveling wave solutions of pure cross-diffusion systems, i.e., systems that lack reaction and self-diffusion terms, is presented. Using the qualitative theory of phase plane analysis the conditions for existence of different…
We describe traveling waves in a basic model for three-dimensional water-wave dynamics in the weakly nonlinear long-wave regime. Small solutions that are periodic in the direction of translation (or orthogonal to it) form an…
We study a class of partial differential equations (PDEs) in the family of the so-called Euler-Poincar\'e differential systems, with the aim of developing a foundation for numerical algorithms of their solutions. This requires particular…
The Benes filter is a well-known continuous-time stochastic filtering model in one dimension that has the advantage of being explicitly solvable. From an evolution equation point of view, the Benes filter is also the solution of the…
This paper addresses the problem of state and parameter estimation for a class of second-order systems with single output. A new filtered transformation is proposed for the system via dynamic vector and matrix. In this method, the dynamics…
In this paper, we develop the mathematical framework for filtering problems arising from biophysical applications where data is collected from confocal laser scanning microscopy recordings of the space-time evolution of intracellular wave…
We propose the set of coupled ordinary differential equations dn_j/dt=(n_{j-1})^2-(n_j)^2 as a discrete analog of the classic Burgers equation. We focus on traveling waves and triangular waves, and find that these special solutions of the…
Effects of the adsorption-desorption process on the immittance response of an electrolytic cell are theoretically investigated in the framework of the diffusional Poisson-Nernst-Planck (PNP) continuum model, when the generation and…
We present a model of one-dimensional irreversible adsorption in which particles once adsorbed immediately shrink to a smaller size or expand to a larger size. Exact solutions for the fill factor and the particle number variance as a…
Diffusion-based generative models use stochastic differential equations (SDEs) and their equivalent ordinary differential equations (ODEs) to establish a smooth connection between a complex data distribution and a tractable prior…