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Modern cancer -omics and pharmacological data hold great promise in precision cancer medicine for developing individualized patient treatments. However, high heterogeneity and noise in such data pose challenges for predicting the response…

Quantitative Methods · Quantitative Biology 2020-11-18 Xiao Li , Tiffany M. Tang , Xuewei Wang , Jean-Pierre A. Kocher , Bin Yu

Generative models for materials have achieved strong performance on periodic bulk crystals, yet their ability to generalize across scale transitions to finite nanostructures remains largely untested. We introduce Crystal-to-Nanoparticle…

Materials Science · Physics 2026-01-28 Can Polat , Erchin Serpedin , Mustafa Kurban , Hasan Kurban

Electroencephalogram-based motor imagery (MI) classification is an important paradigm of non-invasive brain-computer interfaces. Common spatial pattern (CSP), which exploits different energy distributions on the scalp while performing…

Signal Processing · Electrical Eng. & Systems 2024-11-20 Xue Jiang , Lubin Meng , Xinru Chen , Yifan Xu , Dongrui Wu

Connectivity robustness, a crucial aspect for understanding, optimizing, and repairing complex networks, has traditionally been evaluated through time-consuming and often impractical simulations. Fortunately, machine learning provides a new…

Computer Vision and Pattern Recognition · Computer Science 2024-05-30 Wenjun Jiang , Tianlong Fan , Changhao Li , Chuanfu Zhang , Tao Zhang , Zong-fu Luo

Each and every biological function in living organism happens as a result of protein-protein interactions.The diseases are no exception to this. Identifying one or more proteins for a particular disease and then designing a suitable…

Computational Engineering, Finance, and Science · Computer Science 2015-07-31 Anupam Ghosh , Mainak Talukdar , Uttam Kumar Roy

Evolutionary crystal structure prediction proved to be a powerful approach for studying a wide range of materials. Here, we present a specifically designed algorithm for the prediction of the structure of complex crystals consisting of…

Materials Science · Physics 2012-05-21 Qiang Zhu , Artem R. Oganov , Colin W. Glass , Harold T. Stokes

The proliferation of new types of drugs necessitates the urgent development of faster and more accurate detection methods. Traditional detection methods have high requirements for instruments and environments, making the operation complex.…

Computer Vision and Pattern Recognition · Computer Science 2025-05-06 Yongming Li , Peng Wang , Bangdong Han

Stochastic Programming is a powerful modeling framework for decision-making under uncertainty. In this work, we tackle two-stage stochastic programs (2SPs), the most widely used class of stochastic programming models. Solving 2SPs exactly…

Optimization and Control · Mathematics 2022-10-14 Justin Dumouchelle , Rahul Patel , Elias B. Khalil , Merve Bodur

Crystallization is a key step in macromolecular structure determination by crystallography. While a robust theoretical treatment of the process is available, due to the complexity of the system, the experimental process is still largely one…

Biomolecules · Quantitative Biology 2016-08-02 Irem Altan , Patrick Charbonneau , Edward H. Snell

The discovery of new multicomponent inorganic compounds can provide direct solutions to many scientific and engineering challenges, yet the vast size of the uncharted material space dwarfs current synthesis throughput. While the…

Computational Physics · Physics 2022-05-18 Sungwoo Kang , Wonseok Jeong , Changho Hong , Seungwoo Hwang , Youngchae Yoon , Seungwu Han

Last decade has seen the emergence of numerous methods for learning on graphs, particularly Graph Neural Networks (GNNs). These methods, however, are often not directly applicable to more complex structures like bipartite graphs (equivalent…

Machine Learning · Computer Science 2024-09-27 Pavel Procházka , Marek Dědič , Lukáš Bajer

Ensuring energy-efficient design in neuromorphic computing systems necessitates a tailored architecture combined with algorithmic approaches. This manuscript focuses on enhancing brain-inspired perceptual computing machines through a novel…

Neural and Evolutionary Computing · Computer Science 2024-08-15 Ali Shiri Sichani , Sai Kankatala

In this work, we focus on the Partial Constraint Satisfaction Problem (PCSP) over control-flow graphs (CFGs) of programs. PCSP serves as a generalization of the well-known Constraint Satisfaction Problem (CSP). In the CSP framework, we…

Computation and Language · Computer Science 2026-02-04 Xuran Cai , Amir Goharshady

Crystal structure predictions based on the combination of first-principles calculations and machine learning have achieved significant success in materials science. However, most of these approaches are limited to predicting specific…

Materials Science · Physics 2025-01-28 Zongguo Wang , Ziyi Chen , Yang Yuan , Yangang Wang

The combination of deep learning algorithm and materials science has made significant progress in predicting novel materials and understanding various behaviours of materials. Here, we introduced a new model called as the Crystal…

Materials Science · Physics 2024-05-21 Zijian Du , Luozhijie Jin , Le Shu , Yan Cen , Yuanfeng Xu , Yongfeng Mei , Hao Zhang

For a constraint satisfaction problem (CSP), a robust satisfaction algorithm is one that outputs an assignment satisfying most of the constraints on instances that are near-satisfiable. It is known that the CSPs that admit efficient robust…

Data Structures and Algorithms · Computer Science 2025-09-09 Joshua Brakensiek , Venkatesan Guruswami , Sai Sandeep

Estimating the reliability of individual predictions is key to increase the adoption of computational models and artificial intelligence in preclinical drug discovery, as well as to foster its application to guide decision making in…

Quantitative Methods · Quantitative Biology 2019-08-13 Isidro Cortés-Ciriano , Andreas Bender

We have developed an efficient and reliable methodology for crystal structure prediction, merging ab initio total-energy calculations and a specifically devised evolutionary algorithm. This method allows one to predict the most stable…

Materials Science · Physics 2009-11-18 A. R. Oganov , C. W. Glass

Crystal structure prototype data have become a useful source of information for materials discovery in the fields of crystallography, chemistry, physics, and materials science. This work reports the development of a robust and efficient…

Materials Science · Physics 2017-04-05 Chuanxun Su , Jian Lv , Quan Li , Hui Wang , Lijun Zhang , Yanchao Wang , Yanming Ma

Universal machine-learning interatomic potentials (uMLIPs) have become powerful tools for accelerating computational materials discovery by replacing expensive first-principles calculations in crystal structure prediction (CSP). However,…

Materials Science · Physics 2026-02-04 Yuqi An , Zhenbin Wang