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The widespread adoption of web applications has made their security a critical concern and has increased the need for systematic ways to assess whether they can be considered trustworthy. However, "trust" assessment remains an open problem…

Cryptography and Security · Computer Science 2026-03-26 Oleksandr Yarotskyi , José D'Abruzzo Pereira , João R. Campos

Code Large Language Models (Code LLMs) have demonstrated outstanding performance in code-related tasks. Several instruction tuning approaches have been proposed to boost the code generation performance of pre-trained Code LLMs. In this…

Computation and Language · Computer Science 2024-02-15 Yejie Wang , Keqing He , Guanting Dong , Pei Wang , Weihao Zeng , Muxi Diao , Yutao Mou , Mengdi Zhang , Jingang Wang , Xunliang Cai , Weiran Xu

Large Language Models (LLMs) and transformer architectures have shown impressive reasoning and generation capabilities across diverse natural language tasks. However, their reliability and robustness in real-world engineering domains remain…

Machine Learning · Computer Science 2025-12-11 Yasaman Esfandiari , Jocelyn Rego , Austin Meyer , Jonathan Gallagher , Mia Levy

This paper demonstrates that language models are strong structure-based protein designers. We present LM-Design, a generic approach to reprogramming sequence-based protein language models (pLMs), that have learned massive sequential…

Machine Learning · Computer Science 2023-02-10 Zaixiang Zheng , Yifan Deng , Dongyu Xue , Yi Zhou , Fei YE , Quanquan Gu

Large Language Models (LLMs) have demonstrated remarkable capabilities across various domains, with code generation emerging as a key area of focus. While numerous benchmarks have been proposed to evaluate their code generation abilities,…

Large Language Models (LLMs) have helped programmers increase efficiency through code generation, comprehension, and repair. However, their application to large-scale projects remains challenging due to complex interdependencies and the…

Software Engineering · Computer Science 2025-02-26 Wuyang Zhang , Yansong Li , Zeyu Dong , Yu Wu , Yingyao Zhou , Duolei Wang , Songsirou Xing , Chichun Zhou , Da Shen

Large language models (LLMs) struggle to consistently generate UI code that compiles and produces visually relevant designs. Existing approaches to improve generation rely on expensive human feedback or distilling a proprietary model. In…

Computation and Language · Computer Science 2024-06-13 Jason Wu , Eldon Schoop , Alan Leung , Titus Barik , Jeffrey P. Bigham , Jeffrey Nichols

In the past year, MultiModal Large Language Models (MM-LLMs) have undergone substantial advancements, augmenting off-the-shelf LLMs to support MM inputs or outputs via cost-effective training strategies. The resulting models not only…

Computation and Language · Computer Science 2024-05-29 Duzhen Zhang , Yahan Yu , Jiahua Dong , Chenxing Li , Dan Su , Chenhui Chu , Dong Yu

Codebooks are central to framing research, providing theoretically grounded criteria for analyzing news content. While traditionally codebooks are built from theoretical frameworks and researchers' knowledge, applying these codebooks to…

Human-Computer Interaction · Computer Science 2026-04-22 Diego Gomez-Zara , Hernán Valdivieso , Jorge Pérez , Denis Parra , Sebastián Valenzuela

While Large Language Models (LLMs) have achieved strong performance across many NLP tasks, their opaque internal mechanisms hinder trustworthiness and safe deployment. Existing surveys in explainable AI largely focus on post-hoc explanation…

Computation and Language · Computer Science 2026-04-21 Yutong Gao , Qinglin Meng , Yuan Zhou , Liangming Pan

Recent work exploring the capabilities of pre-trained large language models (LLMs) has demonstrated their ability to act as general pattern machines by completing complex token sequences representing a wide array of tasks, including…

Computers and Society · Computer Science 2024-03-25 Seyed Parsa Neshaei , Richard Lee Davis , Adam Hazimeh , Bojan Lazarevski , Pierre Dillenbourg , Tanja Käser

Large language models (LLMs) frequently generate defective outputs in code generation tasks, ranging from logical bugs to security vulnerabilities. While these generation failures are often treated as model-level limitations, empirical…

Software Engineering · Computer Science 2026-05-08 Kaifeng He , Xiaojun Zhang , Peiliang Cai , Mingwei Liu , Yanlin Wang , Chong Wang , Kaifeng Huang , Bihuan Chen , Xin Peng , Zibin Zheng

Large Language Models (LLMs) are revolutionizing bioinformatics, enabling advanced analysis of DNA, RNA, proteins, and single-cell data. This survey provides a systematic review of recent advancements, focusing on genomic sequence modeling,…

Computation and Language · Computer Science 2026-03-03 Zhenyu Wang , Zikang Wang , Jiyue Jiang , Pengan Chen , Xiangyu Shi , Yu Li

Large Language Models (LLMs) have become widely adopted recently. Research explores their use both as autonomous agents and as tools for software engineering. LLM-integrated applications, on the other hand, are software systems that…

Software Engineering · Computer Science 2024-06-21 Irene Weber

Large language models (LLMs) have demonstrated significant potential in the realm of natural language understanding and programming code processing tasks. Their capacity to comprehend and generate human-like code has spurred research into…

Software Engineering · Computer Science 2024-03-07 Chongzhou Fang , Ning Miao , Shaurya Srivastav , Jialin Liu , Ruoyu Zhang , Ruijie Fang , Asmita , Ryan Tsang , Najmeh Nazari , Han Wang , Houman Homayoun

Automating hardware design could obviate a significant amount of human error from the engineering process and lead to fewer errors. Verilog is a popular hardware description language to model and design digital systems, thus generating…

Programming Languages · Computer Science 2022-12-22 Shailja Thakur , Baleegh Ahmad , Zhenxing Fan , Hammond Pearce , Benjamin Tan , Ramesh Karri , Brendan Dolan-Gavitt , Siddharth Garg

The advent of large language models (LLMs) has significantly advanced artificial intelligence (AI) in software engineering (SE), with source code embeddings playing a crucial role in tasks such as source code clone detection and source code…

Software Engineering · Computer Science 2025-06-04 Zixiang Xian , Chenhui Cui , Rubing Huang , Chunrong Fang , Zhenyu Chen

Large Language Models (LLMs) exhibit emerging in-context learning abilities through prompt engineering. The recent progress in large-scale generative models has further expanded their use in real-world language applications. However, the…

Computation and Language · Computer Science 2024-04-12 Linyi Yang , Shuibai Zhang , Zhuohao Yu , Guangsheng Bao , Yidong Wang , Jindong Wang , Ruochen Xu , Wei Ye , Xing Xie , Weizhu Chen , Yue Zhang

Large Vision-Language Models (LVLMs) have shown impressive capabilities across a range of tasks that integrate visual and textual understanding, such as image captioning and visual question answering. These models are trained on large-scale…

Computer Vision and Pattern Recognition · Computer Science 2026-03-11 Xiaomei Zhang , Hanyu Zheng , Xiangyu Zhu , Jinghuan Wei , Junhong Zou , Zhen Lei , Zhaoxiang Zhang

Large language models (LLMs) are a class of artificial intelligence models based on deep learning, which have great performance in various tasks, especially in natural language processing (NLP). Large language models typically consist of…

Quantitative Methods · Quantitative Biology 2025-02-04 Jiajia Liu , Mengyuan Yang , Yankai Yu , Haixia Xu , Tiangang Wang , Kang Li , Xiaobo Zhou